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Detailed information on CNT30179357


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672423Secale cerealeSetaria viridis10.9321.593.4106forward
CNT30386304Secale cerealeTriticum turgidum32.6858.9288.96317forward
CNT30553525Secale cerealeOryza glaberrima28.0438.4290.07272forward
CNT3017553Secale cerealeZea mays11.1341.8693.52108forward
CNT30680899Secale cerealeTriticum urartu11.9629.2999.14116forward
CNT30720672Secale cerealeTriticum spelta14.6426.9498.59142forward
CNT30349409Secale cerealeEragrostis tef29.592487.46287forward
CNT30596052Secale cerealeOryza meridionalis21.9639.0894.37213forward
CNT30101149Secale cerealeOryza rufipogon21.9639.0894.37213forward
CNT30584364Secale cerealeEchinochloa crusgalli13.7126.5591.73133forward
CNT30498207Secale cerealeDigitaria exilis18.0433.9886.86175forward
CNT30604057Secale cerealeOryza punctata11.7528.6496.49114forward

Expression of CNT30179357

Peptides detected in this lncRNA

>peptide 1 (70 aa)
IEKALHYVMEGVLFFTILLLDKTSHDSSVALLDWKQSLIPPSYKQATVRAHTRLRSDQNVHCQRKRKKNK*

>peptide 2 (82 aa)
RESTTLCNGGSTIFYYFAIGQNKSRLISSTLGLEAKSYSSIVQASNRTRPHTAQIRSECTLPKKKEKKQVKCSKPKSRSPTS*

>peptide 3 (71 aa)
MAASSQVAAQLVALPTRGMELILVKASTLKLAPHMTPSLSTRGSALSRFMGCSKLLSPPSLWNMHPGGNGA*

Sequence

>CNT30179357
ATAGAGAAAGCACTACATTATGTAATGGAGGGAGTACTATTTTTTACTATTTTGCTATTGGACAAAACAAGTCACGACTCATCAGTAGCACTCTTGGACT
GGAAGCAAAGTCTTATTCCTCCATCGTACAAGCAAGCAACCGTACGCGCCCACACACGGCTCAGATCAGATCAGAATGTACATTGCCAAAGAAAAAGGAA
AAAAAACAAGTAAAATGCAGTAAGCCCAAATCCAGAAGTCCGACGAGCTAGGCGAGCGTCGCCGGCGCCGGGTAGATCATCAGATGGCGGCTTCGTCCCA
GGTGGCGGCCCAGTTGGTGGCGCTGCCGACGCGGGGCATGGAGTTGATCTTGGTGAAGGCGTCGACCTTGAAGTTGGCGCCGCACATGACGCCCTCGCTG
TCCACGCGCGGGAGCGCCTTGAGCCGGTTCATGGGGTGCTCGAAGCTCTTGAGCCCGCCCTCGCTGTGGAACATGCACCCGGGCGGGAACGGCGCGTAGG
ACCGCCCGCACCCGGCCTTGGCCACGCCGCGGTCGTCGCAGATCACCACCGACCCGTCCGCCGCCACGCCCCAGTGCAGCGGCACCCCGCCGTCCGTGCT
CTGCGCCGCGAACACCGCCGCGCCGGAGCCGGACCGGCCGCGGTTGTCGAAGACGACGAAGGAGGTGGAGAAGGCGTCGGAGGGGTGGGCGGCGTGGAAG
TCGCGGAGGATCTCGTCGGGGTTCCTGGGCTTGGCGGTGCTGCCGCGCGGGCTGTTGAGCTCCTGCGGCGCGTGCGCCACCTGCTTCTGGAAGATGGCCA
ACATCTTCACAAACCAAATGTTTAATCACTAGTACTAGCACTACTTCTTTCTCGCTCGAGCTGGAGCTGCTGCTGTGGAGACGACAGGAGAGGAGATGGA
GCTTGTCGTAACGGGCAATGGCGAATGGAATGGAGGTTGAGGATGGAGATGGGCGCGTGTTTTATAGGGC