« Back to Secale cereale search


Detailed information on CNT30178572


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30285390Secale cerealeTriticum aestivum40.658.3887.04216forward
CNT30383171Secale cerealeTriticum turgidum60.1555.6585.94320forward
CNT30576447Secale cerealeOryza barthii12.412286.3666forward

Expression of CNT30178572

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MGSRSGEAAAEAGRTASLRPEMELPARPLTATGWTATSDAIAIELRVYGGRACPGSGAAGYVRTL*

>peptide 2 (31 aa)
MVHKHGARGGRLQRFRSCRVAPGWGAAGAPS*

Sequence

>CNT30178572
TATCCTCTAGACAAGTAATTTAAACCGCCAGCATAGCAAAAACATGGTACAAAAACCAGTACAGCAATCATCAAAGAGCAAATGATCTATAGTAATTGCA
TGCATCATGCACGCAGCATCTTTCCAATTACTGACACGAAGTAGTACAAAGATCAAGTATCAACAGAGCAGGTAGATAAGGGGGGAATCGACGAGATCCA
TGGTACACAAGCACGGGGCGAGAGGAGGAAGATTGCAGAGATTTAGATCTTGCCGCGTGGCCCCGGGGTGGGGGGCAGCTGGGGCCCCTTCTTGATGGGG
AGCAGGTCGGGGGAGGCGGCGGCGGAGGCGGGCCGGACGGCGAGCTTGCGGCCGGAGATGGAGCTGCCGGCCAGGCCCCTCACGGCGACCGGCTGGACCG
CGACGAGCGACGCCATTGCGATCGAGCTGCGCGTATACGGTGGGCGCGCGTGTCCTGGTTCTGGAGCTGCGGGGTACGTGCGCACACTTTGATCAGTGGA
TGCTGTTAAGGATTTGAAACGCTTGGCCGTCG