Detailed information on CNT30178569


BLAST search results

BLAST vs Swiss-Prot:
sp|P05621|H2B2_WHEAT, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674495Secale cerealeSetaria viridis25.3543.2796.34164forward
CNT30523132Secale cerealeSetaria italica25.3527.4796.34164forward
CNT30220711Secale cerealeHordeum vulgare44.0527.5194.04285forward
CNT30434860Secale cerealeAegilops tauschii42.9744.8496.4278forward
CNT30719840Secale cerealeTriticum spelta40.4942.3994.27262forward
CNT30363844Secale cerealeSorghum bicolor27.6722.5494.41179forward
CNT30355733Secale cerealeLactuca sativa10.8228.119070forward
CNT30108786Secale cerealeOryza longistaminata46.838.9585.48303forward

Expression of CNT30178569

Peptides detected in this lncRNA

>peptide 1 (59 aa)
NLGSQQRGVSKHSAIHVKFSNNTTSNIDIQIDQHLQFSQQTSQRSVGNHPALLPLLADT*

Sequence

>CNT30178569
TGAATCTCGGTTCGCAGCAACGAGGCGTCAGCAAGCATTCAGCGATACACGTGAAATTCAGTAACAATACTACTTCCAACATTGACATTCAGATAGATCA
GCATCTTCAGTTCTCACAACAAACTAGCCAACGAAGCGTTGGCAATCATCCAGCACTCCTACCACTACTTGCAGATACATAAGCAGAGTCAGCGACTAAC
AGCAGCCAACTACGTCTGTCACAACAAGCGACGCATAGTCAATCTAGGAGGAGGTGAACTTCGTGACAGCCTTAGTGCCCTCGGAGACGGCGTGCTTGGC
GAGCTCCCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTGAAGATGTAGATC
TTGTACGTCTCCACGCCCTTCTTGGCCTTGCTGCCCTTCTTCCTGCCCCTGGTCTTCCCCTCGCCGCCGGCCTCCTTGGACGCCGTCTTGCCCGCCGGCA
GCCGCTTCTCGGCCTTTGGCTTCTTTCCCGCGGGGGTCTTCTCCGCCGCCTTCTCGACCTTGTTCTCGGCGACCGGCTTCTTGTCTGCCTTGGGGGCCAT
GGCTGCTGCGGGAGCTTCGGAGATGAGAGTGAGAGAAGAGGTGTTTT