Detailed information on CNT30178462


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30576324Secale cerealeOryza barthii32.159.7185100forward
CNT30116799Secale cerealeOryza nivara32.1512.4585100forward
CNT30604087Secale cerealeOryza punctata31.8311.984.8599forward

Expression of CNT30178462

Peptides detected in this lncRNA

>peptide 1 (44 aa)
ESENSRMMINAIQSSSKEYIAEILEEVNVENSVLSHPSPRAANR*

>peptide 2 (64 aa)
MWKIQSCLTLPPAPPTARRLGRAPRSPCRRPPLLLPPPSPPLGGAAGQSPTGGGGGAPSSSSAR*

Sequence

>CNT30178462
ATGAGAGTGAGAACTCGAGGATGATGATCAACGCCATACAAAGTTCATCAAAGGAATACATTGCTGAGATTCTTGAGGAGGTAAATGTGGAAAATTCAGT
CTTGTCTCACCCTTCCCCCCGCGCCGCCAACCGCTAGGCGGCTGGGGCGGGCGCCCAGATCCCCCTGCCGCCGGCCTCCCCTCCTCCTCCCTCCTCCCTC
GCCGCCGCTAGGGGGCGCGGCCGGGCAAAGCCCGACCGGCGGCGGCGGCGGGGCGCCTTCTTCCTCCTCCGCGCGATGAGGCGGCGCGAACTCCTCCTTC
GAGTGCAGGCG