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Detailed information on CNT30178026


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 2e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693422Secale cerealeOryza sativa23.8418.7682.71133forward
CNT30673198Secale cerealeSetaria viridis19.3547.3789.81108forward
CNT30520893Secale cerealeSetaria italica19.3529.5989.81108forward
CNT30285918Secale cerealeTriticum aestivum33.8740.2198.41189forward
CNT30220389Secale cerealeHordeum vulgare41.7653.3287.98233forward
CNT30384456Secale cerealeTriticum turgidum36.9238.598.54206forward
CNT30591852Secale cerealeMusa acuminata15.0520.1484.5284forward
CNT30435366Secale cerealeAegilops tauschii27.0633.19100151forward
CNT30240485Secale cerealeAvena sativa44.6284.4193.57249forward
CNT30655703Secale cerealeTriticum dicoccoides59.8693.0493.71334forward
CNT30131491Secale cerealeLolium perenne47.1353.3593.54263forward
CNT30679988Secale cerealeTriticum urartu8162.0988.5452forward
CNT30370255Secale cerealeOryza glumipatula23.8420.8882.71133forward
CNT30149479Secale cerealeBrachypodium distachyon41.5860.2690.52232forward
CNT30101773Secale cerealeOryza rufipogon23.8416.1482.71133forward
CNT30496965Secale cerealeDigitaria exilis19.3531.7688.89108forward
CNT30116717Secale cerealeOryza nivara23.8416.1882.71133forward
CNT30604128Secale cerealeOryza punctata13.9826.991.0378forward

Expression of CNT30178026

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVHKHGARGGRLQRFRSCRVAPGWGAAGAPS*

>peptide 2 (29 aa)
MGSSSTLSSRPRLVKGAAKVLKNLLCRPL*

Sequence

>CNT30178026
GCTAGAGTGACATAAACCAAAGGGGAAGAACTATAGATCGGCACTGTATCCTCTAGACAAGTAATTTAAACCGCCAGCATAGCAAAAACATGGTACAAAA
ACCAGTACAGCAATCATCAAAGAGCAAATGATCTATAGTAATTGCATGCATCATGCACGCAGCATCTTTCCAATTACTGACACGAAGTAGTACAAAGATC
AAGTATCAACAGAGCAGGTAGATAAGGGGGGAATCGACGAGATCCATGGTACACAAGCACGGGGCGAGAGGAGGAAGATTGCAGAGATTTAGATCTTGCC
GCGTGGCCCCGGGGTGGGGGGCAGCTGGGGCCCCTTCTTGATGGGGAGCAGCAGCACCTTGAGCAGCAGGCCGCGCTTGGTGAAGGGCGCGGCGAAGGTG
TTGAAGAACTTGCTCTGCAGGCCGTTGTAGGGCGACGCCGCGTCGCTGCCGTACAGGTCCCACTGCCCCGTCGTGTTGGCGATGTCGTCCAGGTCGAAGT
AGACGCTCTTCTCCCCGTACTTGGCCACCACCGCCGCCCCGCGAGCCCTGCCGTTCAC