CANTATAdb - search

Detailed information on CNT30174525

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004927, E-value = 1e-65

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30220355	Vigna angularis	Hordeum vulgare	33.59	58.86	96.02	176	reverse complement

Expression of CNT30174525

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MLSAVIRSALGYPAFTVGTITGTPESTHLGVGFLLRCFQQLSAPHLATQRLPWAR*

>peptide 2 (47 aa)
MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGK

Sequence

>CNT30174525
CTGATCGAATTGATCGGATCATGTAGGAACAAGGTTCAAGTCTAACGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTA
TCATTAATTAGAAACGGCTCGTCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTTTCGCTCCATCCCCGCTGGGGCAGAGAACCCATCGCTGTCTC
GGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGTTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCAC
TTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGCACACCAGAGAGCACTCATCTTGGGGTGGGTTTCCTACTTAGATGCTTTCAGCAGTTATCCGC
TCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGCACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAAT
GCTCTAACGCCCACACCGGTAAAT