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Detailed information on CNT30174435


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1S9I9|H2B1_MEDTR, E-value = 3e-57

BLAST vs NONCODE:
NONGMAT000269, E-value = 2e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523103Vigna angularisSetaria italica24.9324.782.04167forward
CNT30315505Vigna angularisCorylus avellana25.3737.288.24170forward
CNT30518188Vigna angularisJuglans regia39.730.1984.96266forward
CNT3072234Vigna angularisQuercus suber26.7228.4183.24179forward
CNT30379403Vigna angularisManihot esculenta39.747.3381.58266forward
CNT30526608Vigna angularisPhaseolus vulgaris46.8738.8192.68314forward
CNT30632073Vigna angularisVigna unguiculata31.4928.0695.26211forward
CNT30200173Vigna angularisPisum sativum39.8544.7288.39267forward
CNT30163367Vigna angularisPistacia vera39.431.6981.82264forward
CNT3094085Vigna angularisSolanum tuberosum38.8151.4983.08260forward
CNT30180643Vigna angularisSecale cereale28.0622.7383.51188forward
CNT30307570Vigna angularisTriticum aestivum39.734.8681.2266forward
CNT30220711Vigna angularisHordeum vulgare28.0618.1582.98188forward
CNT30395424Vigna angularisTriticum turgidum39.755.380.45266forward
CNT30565715Vigna angularisActinidia chinensis39.733.8984.21266forward
CNT30586986Vigna angularisMusa acuminata23.8845.288.12160forward
CNT3086649Vigna angularisVigna radiata24.9322.3988.62167forward
CNT30510004Vigna angularisSolanum lycopersicum12.2426.8987.882forward
CNT30552027Vigna angularisOryza glaberrima27.6134.3281.62185forward
CNT30171046Vigna angularisTrifolium pratense27.6152.1189.19185forward
CNT30443203Vigna angularisAegilops tauschii39.740.5580.83266forward
CNT30241394Vigna angularisAvena sativa39.2550.181.37263forward
CNT30668428Vigna angularisTriticum dicoccoides39.747.5881.2266forward
CNT30597299Vigna angularisFraxinus excelsior32.5439.7182.57218forward
CNT30457287Vigna angularisSaccharum spontaneum39.8532.0180.52267forward
CNT30136307Vigna angularisLolium perenne39.8544.9580.52267forward
CNT30610418Vigna angularisGossypium raimondii40.4528.1782.66271forward
CNT30205622Vigna angularisHelianthus annuus13.2832.9684.2789forward
CNT30129800Vigna angularisCorymbia citriodora39.733.0484.59266forward
CNT30688994Vigna angularisTriticum urartu26.7231.6882.68179forward
CNT30722188Vigna angularisTriticum spelta39.738.9581.2266forward
CNT30363575Vigna angularisSorghum bicolor39.728.8580.45266forward
CNT30360078Vigna angularisLactuca sativa38.8132.8383.85260forward
CNT30369169Vigna angularisOryza glumipatula39.446.0780.3264forward
CNT30429187Vigna angularisPapaver somniferum39.2525.2482.89263forward
CNT30570929Vigna angularisVitis vinifera37.0136.9683.87248forward
CNT3024772Vigna angularisPopulus trichocarpa38.9644.0181.61261forward
CNT30327286Vigna angularisAsparagus officinalis24.9318.4786.83167forward
CNT30574682Vigna angularisOryza barthii25.3724.8581.76170forward
CNT30496069Vigna angularisDigitaria exilis39.733.3379.7266forward
CNT30724478Vigna angularisLupinus angustifolius35.6739.6484.94239forward

Expression of CNT30174435

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MSPHSSCFSSSSYHRQLLPPSEASFLPSASSPLASFLPLVPYLEQKLET*

Sequence

>CNT30174435
TACATGATTTGGTATCAAACACTTCTATTGCATCAATTTAATCATTTTAATACATAGAGGCTGTGCACAATCACATTTTTTCAGTTTAAACTAAAACTAA
AACCCTACTGGTTGAAATCGAGGATTAAAACATTAGATCCAATAAATACAACTAATAAGCATAAGGGACCAAGAACACAGGTCAGACATAAAATAACTTG
TTTAGGAACTAGTGAACTTGGTAACGGCCTTGGTACCCTCAGAGACGGCATGTTTGGCCAATTCTCCAGGCAATACAAGTCTGACAGCAGTCTGGATTTC
CCTTGAAGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGTCTAGAAGATTCCTGCGCAAGCTTCTCAAATATGTCGTTGATGAAACTGTTCATGATGCCC
ATAGCCTTGCTGGAGATACCAATGTCAGGGTGAACCTGCTTCAAAACCTTGAAGATGTAGATCTTGTATGTCTCCACACTCTTCTTGCTTCTCTTCTTCT
TCTTATCACCGCCAGCTCCTCCCTCCTTCGGAAGCTTCTTTCCTGCCTTCGGCTTCTTCTCCGCTGGCTTCTTTTCTGCCTTTGGTGCCATATCTAGAGC
AGAAGTTGGAGACCTGAAGAGAATTAGGGTTTTGAATTGAGATTCAGAAAGCTTAATGGAAAAGCTATTG