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Detailed information on CNT30173780


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHE8|PSAF_ARATH, E-value = 3e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30273262Trifolium pratenseChenopodium quinoa21.856.2883.65104forward
CNT30194965Trifolium pratensePisum sativum19.1224.0187.9191forward
CNT30144424Trifolium pratenseMedicago truncatula51.8950.5187.04247forward

Expression of CNT30173780

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MMSFGFWVSFGLRVVVGLERLVGMVRDIFFVRKNKKE*

>peptide 2 (41 aa)
MVLGRIYRRQRGVQLRMLLNLNLQVHLFFLCCVEFDLCCSG*

Sequence

>CNT30173780
CTGATCACCATTCACAATCAAATGTGGTAATCCATCAGCACCACATAACAAACCTTGTTTCGCATAATTATCGAATCTTCTCTTAGTTTTCTCAACAGTT
GCTTTAATAGCTAATGCTGGTGCACTATCAGGAGCATAAAGCTTTAGAGATGATTCAAGTTTCTTGATTGATTGTTTTTCGCGCTTCGCGAATTGTTTTG
ATTCTTTGCATGGTGTTAGGCCGGATATATCGGCGACAGCGGGGAGTGCAGCTGAGAATGCTTTTAAATTTGAACTTGCAAGTTCATTTGTTTTTTCTGT
GTTGTGTTGAGTTTGATTTGTGCTGCAGTGGATGATGAGTTTTGGTTTTTGGGTGAGTTTTGGTCTTAGGGTTGTGGTGGGTTTGGAGAGATTAGTGGGA
ATGGTGAGAGACATTTTTTTTGTGAGGAAGAACAAGAAAGAATGAAGGGTGTGTTTGGATATGAATTTTGTGTTGT