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Detailed information on CNT30172842


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1S9I9|H2B1_MEDTR, E-value = 7e-58

BLAST vs NONCODE:
NONTPRT005013, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674774Trifolium pratenseSetaria viridis20.419.0683.19113forward
CNT30702570Trifolium pratenseQuercus lobata20.422.689.38113forward
CNT30381273Trifolium pratenseManihot esculenta31.2348.4682.66173forward
CNT30526608Trifolium pratensePhaseolus vulgaris48.3833.1385.82268forward
CNT30200086Trifolium pratensePisum sativum48.9250.8491.14271forward
CNT30163372Trifolium pratensePistacia vera43.1441.4984.94239forward
CNT3094085Trifolium pratenseSolanum tuberosum48.3853.0781.72268forward
CNT3015998Trifolium pratenseZea mays19.3127.7283.18107forward
CNT30610418Trifolium pratenseGossypium raimondii36.8221.2185.29204forward
CNT30721953Trifolium pratenseTriticum spelta20.416.1283.19113forward
CNT30596761Trifolium pratenseOryza meridionalis20.414.381.42113forward
CNT30360078Trifolium pratenseLactuca sativa46.3932.4582.88257forward
CNT30154529Trifolium pratensePrunus persica19.3145.3483.18107forward
CNT30433262Trifolium pratensePapaver somniferum48.0137.3686.84266forward
CNT3024639Trifolium pratensePopulus trichocarpa20.5827.6784.21114forward
CNT30103076Trifolium pratenseOryza rufipogon20.418.7481.42113forward
CNT30577496Trifolium pratenseOryza barthii20.421.1681.42113forward
CNT30724509Trifolium pratenseLupinus angustifolius50.952.2282.27282forward

Expression of CNT30172842

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MFLRSSCFSSSSSLLLLLNHRPLAASFLPLASSQREPSLLRWTSSPLRVSSPLASSLLLVPLNRRFGNLEKIRGLELGIGNEIRSRVNEF

>peptide 2 (53 aa)
QIVNTSLRTCEFSHSFCTLRNSMLSQFTGKNKSDSSLNFPRSDCWLLVVPCKS*

Sequence

>CNT30172842
CAAATAGTAAATACAAGTCTAAGAACTTGTGAATTTAGTCACAGCTTTTGTACCCTCAGAAACAGCATGCTTAGCCAATTCACCGGGAAGAACAAGTCTG
ACAGCAGTTTGAATTTCCCTAGAAGTGATTGTTGGCTTCTTGTTGTACCTTGCAAGTCTTGATGATTCTTGTGCGAGTTTCTCGAAGATGTCGTTGATGA
AACTGTTCATTATTCCCATGGCTTTGCTTGAGATACCAATGTCTGGGTGAACTTGTTTCAGAACTTTGAAGATGTAGATCTTGTATGTTTCTACGCTCTT
CTTGTTTCTCTTCTTCTTCTTCTCTCCTGCTGCTGCTGAACCACCGTCCTTTGGCAGCTTCTTTCCTGCCTTTGGCTTCTTCTCAGCGGGAGCCTTCTCT
GCTACGGTGGACTTCTTCTCCTCTGCGGGTTTCTTCTCCGCTGGCTTCTTCTCTCCTTTTGGTGCCATTGAATAGGAGATTTGGGAATTTGGAGAAAATT
AGGGGTTTGGAATTGGGAATTGGAAATGAAATTAGAAGCAGAGTGAATGAGTTT