Detailed information on CNT30172717


BLAST search results

BLAST vs Swiss-Prot:
sp|P93111|HEM11_CUCSA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381428Trifolium pratenseManihot esculenta26.6147.5984.57376forward
CNT30567387Trifolium pratenseActinidia chinensis32.9148.5981.94465forward
CNT30146035Trifolium pratenseMedicago truncatula15.2987.4585.65216forward
CNT3022469Trifolium pratensePopulus trichocarpa10.3344.9282.88146forward
CNT30118924Trifolium pratenseCitrus clementina20.1751.4479.65285forward
CNT30723409Trifolium pratenseLupinus angustifolius6.5121.389.1392forward

Expression of CNT30172717

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVGTVSSESLQASNCFNSSTMITCASLAFLNRSSLLAATTSLRSSTL*

>peptide 2 (33 aa)
NTPIRQILFVVNTELIQTFSFRYNTKLNGCVNK*

>peptide 3 (65 aa)
MCMSMKLVLDPSYFWFCSTFARTFCSKTDISVSRLNILFKACMFSRVSVRVRSSLPSHLKCCIGP*

>peptide 4 (61 aa)
MVSFPLILMKEINVYVNEIGVGSILLLVLFNLCSNLLLQNRYFSLKAEHSIQSMHVLKGLS*

>peptide 5 (42 aa)
MCKQIGRKPKRVWPSSTQTQQSIEAPPRRLLLFQLQLNIQPF*

Sequence

>CNT30172717
AACACTCCAATTAGACAAATATTATTCGTAGTAAATACAGAGCTCATACAAACATTTTCATTTCGGTATAATACAAAACTAAATGGATGTGTAAACAAAT
AGGCCGAAAGCCCAAACGAGTTTGGCCTAGCAGCACACAGACACAACAATCAATTGAAGCTCCGCCAAGGAGACTTCTACTGTTTCAACTGCAACTAAAT
ATACAACCATTTTAAATCCCAAAATGGTGAGTTTTCCTCTTATTCTAATGAAGGAAATAAATGTGTATGTCAATGAAATTGGTGTTGGATCCATCTTACT
TCTGGTTTTGTTCAACCTTTGCTCGAACCTTCTGCTCCAAAACAGATATTTCAGTCTCAAGGCTGAACATTCTATTCAAAGCATGCATGTTCTCAAGGGT
CTCAGTTAGAGTCCGGTCGTCACTCCCATCACACCTCAAATGTTGCATTGGACCATGAAGCATCCTATTCACAATACCTCGACTAAGATCATCCACAGCT
TTCCGCGTCTTCTTTGAGATATCATCACCCATCTTACCCAAACATTTCTCAAGCTCAGCAACCCTGATCCTTTCAGCATAGGCTCTCAATTTTTTAATGG
TAGGAACAGTTTCCAGCGAGTCCCTCCAAGCTTCAAATTGCTTTAACTCTTCAACAATGATCACCTGCGCTTCTCTTGCTTTTCTTAATCGATCCTCTTT
GTTGGCAGCCACAACCTCTTTAAGGTCATCAACATTGTAAACTCGCACAGAGTCAATATCTGAGACACATGAACCAACATTTCGAGGAACAGAAATGTCA
ATGAAAAGGCGACGGCCTCCAACCTCTTGACTTGCTGGAGGAAGGTCCTTGACATCATCTTTCATGAATAATGGGTTTTCTGATGCTGTACTGGTGAAAA
CGACATCAGCTTTACAGGTACAAGAGAGCATTTCTGAAAGAGGTTTGTAAATTATTTCAATATCTTTCAGTTCTTCGCGTATTGCAGCAACTCTCTCCTC
AGTTCTATTGACAACAACCATCCTTGTACAACCTTTTGAAACCAAATGTTTGATCACGAGCTTTCCCATCTTACCAGCACCTATAACCAGCATCCTGGCA
TTACCATGTGAGGCATCGGGCAGCTTCATGTAGGCCAATTCAACTGCAGCTGAGCTCACAGAAACTGCCCCAGCAGCAATATTGGTCTCCGCTCTAACCC
TCTTTCCAACAGTTATTGCATGCTTGAATAGACCACTAATGTTTCTTCCAAAGCCATTAACTCCTTGTCCAACTTTGACAACTTGTTTAACCTGAGAAAG
GATTTGACCTTCTCCCAATACCAGAGACTCAAGACCCGCCGACACTTGAAAAATGTGCTGTGTGGCATCTTTGTTGTATAGTAAAAACCGGTGCTCGCAG
AGGTCTGAAACAG