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Detailed information on CNT30172429


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-51

BLAST vs NONCODE:
NONGMAT000508, E-value = 2e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375418Trifolium pratenseArabidopsis thaliana20.8757.288.15135forward
CNT30616210Trifolium pratenseSesamum indicum47.324.4679.08306forward
CNT3069058Trifolium pratenseQuercus suber47.1434.8680.98305forward
CNT30198310Trifolium pratensePisum sativum48.8440.0586.39316forward
CNT30504865Trifolium pratenseNicotiana attenuata33.8542.7781.74219forward
CNT3042757Trifolium pratensePrunus dulcis37.2539.7780.91241forward
CNT3092650Trifolium pratenseSolanum tuberosum33.8557.0380.82219forward
CNT3086283Trifolium pratenseVigna radiata42.8118.6482.31277forward
CNT30261175Trifolium pratenseBrassica rapa41.1156.3680.83266forward
CNT30611328Trifolium pratenseArabis alpina29.3741.6788.95190forward
CNT30211420Trifolium pratenseHelianthus annuus47.1461.4982.95305forward
CNT30414711Trifolium pratensePapaver somniferum45.931.0784.18297forward
CNT3052246Trifolium pratenseAmborella trichopoda41.7322.4181.85270forward
CNT30327358Trifolium pratenseAsparagus officinalis19.1729.1882.26124forward

Expression of CNT30172429

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPWMLSRRTFLCLFAPPFPNPLPPFPRPDIFVAVKKMDFSYNYEL*

Sequence

>CNT30172429
GGCGTTTCAAATGTAATTGCAGTAAAAGAGTATTCAATATTCATTCATCAATAAGATCCAATTACAAATACTAGAAACACAGAACTAATCGATTCATTTC
AATTCAACCAGATCTAAGACTAATCTAATCAAAGATTCAAAAGAACCGAATCAAGAACATAACAGAAATACAACAAAATCAACAAACATTTACAACTAAA
TCAAGCTAGGTCAATCAGAAACCCTAAATTGAACCCTAAAATCAACCACCGAAACCGTAAAGAGTCCTTCCCTGCCTCTTCAAAGCATAAACAACATCCA
TAGCGGTAACGGTTTTCCTCCTAGCGTGCTCAGTGTAGGTAACAGCATCACGAATCACGTTCTCGAGAAAGATCTTGAGAACACCACGAGTTTCTTCATA
GATCAAACCACTGATTCTCTTGACACCACCTCTTCTGGCTAAACGACGAATTGCAGGTTTTGTTATGCCCTGGATGTTATCACGAAGAACCTTCCTGTGT
CTCTTTGCACCTCCCTTTCCCAATCCCTTACCTCCTTTTCCGCGACCTGACATTTTTGTTGCAGTGAAGAAAATGGATTTTTCTTATAATTATGAACTTT
GAAGATTAGAAGAAGATTGGTTTTGGAATGAATGAAAATTCCTTTCC