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Detailed information on CNT30172317


BLAST search results

BLAST vs Swiss-Prot:
sp|P49107|PSAN_ARATH, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30144582Trifolium pratenseMedicago truncatula36.4591.388.64273forward

Expression of CNT30172317

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFSITVGMSESQSRKSTMIFQKLQTVAFVKSPWITVILTYPR*

Sequence

>CNT30172317
CTTAAGTGTGCTGAAAATTATGAAAGAAGAGTTAAACACATTCATATAAAACAAGACTATATAAGCTATCAACTATATATAAGTTAAGTGGGTTTAACCT
TACCAAATAGAGCCAAATATACTACTGATTTTCTTAGTCTATGTTTAGTATCACTGTAGGTATGTCAGAATCACAATCACGAAAATCCACTATGATTTTT
CAAAAGTTGCAAACTGTAGCTTTTGTGAAATCACCTTGGATAACTGTGATTCTGACGTATCCACGGTAATACCAAACATGGGCTAATATAAGATAAAATT
GCAACAATAAAAAGCTTCTAACAAGGGAAGAAAGATAAAAAAGGAAGTAAAATTAATTGTGGCAAAGAGTAAGGATTGATTAGAGTACCTTGTTGGCCTT
GCTCTTTTCAAGGTATTCATCAAAAACACTAGCATTAGCAGATGAATTGGAAGCTGAAACAGCAGTGGTGAAAAGGGTAGCTGCCAATAAAGCAATAGCA
TTTCTCCTTCCATCACTTCTTGATTCTTTGGCTTCAGGAATTCTCACTTGCTGAGCTTTGATCACTGGCAACTTGGAACCTGAAACCCCTACAGGTGATG
CAACAGAAGGCATGGAAATGAGCTTTGCATTGAGCTCAGAAGAACCAGATAAGGCATAGCTACAAGCCAATACACTTGAGTTCATGGCAGCCATGTGAAT
TGAATTGGTAGTTTTGATCTGTAATGTGTATCAGAGATTATGTTGCCAG