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Detailed information on CNT30171779


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7X999|RCA2_LARTR, E-value = 9e-61

BLAST vs NONCODE:
NONBRAT001511, E-value = 1e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617865Trifolium pratenseSesamum indicum57.5898.1584.59266forward
CNT30727556Trifolium pratenseCorchorus capsularis60.8236.1689.32281forward
CNT30524690Trifolium pratensePhaseolus vulgaris64.2929.8290.57297forward
CNT30712287Trifolium pratenseGlycine max64.2919.3289.9297forward
CNT30223170Trifolium pratenseHordeum vulgare46.5444.2483.72215forward
CNT3075041Trifolium pratenseBrassica juncea32.964.1488.16152forward
CNT30218871Trifolium pratenseKalanchoe fedtschenkoi39.1841.6186.19181forward
CNT30150829Trifolium pratenseBrachypodium distachyon46.9745.9782.03217forward
CNT3039667Trifolium pratenseMarchantia polymorpha22.9446.983.02106forward

Expression of CNT30171779

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MNRQHIFPFLIMSEASRYLCLINFAGSPAFPLSSSPA

>peptide 2 (39 aa)
MMGTRAFSSLLYIPGSWTFVGASAMFMSVALTIWLLTVY*

Sequence

>CNT30171779
ACCAAATTCAATTTAACATTGTACATATAACAAAATTACACAGGAATAAGACACTCCAAAAAGAAAAATAATAATAAAATTATCTCAAACTTGGAATCTC
TTCTTTCCACCTAATAATACATTGAGAATATTGTAAGCACAAACTTCTAGTAGTTGGATTGAAGTTTGAGAAATCGTTACCAGTGACAATGATGGGAACA
CGAGCGTTCTCTTCCTTGTTGTACATACCGGGGAGTTGGACATTTGTGGGGGCATCAGCAATGTTCATGAGTGTTGCATTAACCATCTGGTTGTTGACAG
TGTATTGAGTGGTTCCACCCATACGACCTGCTCCTGCATCAAGATCGTTGATGAACAGACAACACATCTTTCCCTTCCTGATTATGTCAGAAGCTTCACG
GTATCTCTGTCTGATCAATTTTGCTGGCTCTCCTGCATTTCCACTTTCAAGCTCTCCAGCAC