« Back to Trifolium pratense search


Detailed information on CNT30171766


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7X999|RCA2_LARTR, E-value = 2e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712253Trifolium pratenseGlycine max16.0158.5285.82134forward
CNT3096945Trifolium pratenseSolanum tuberosum9.830.0487.882forward
CNT30185579Trifolium pratenseSecale cereale18.440.3184.42154forward
CNT30564971Trifolium pratenseActinidia chinensis12.5436.4686.67105forward
CNT30144634Trifolium pratenseMedicago truncatula25.3353.8191.98212forward
CNT30260992Trifolium pratenseBrassica rapa18.459.2387.01154forward
CNT30433485Trifolium pratensePapaver somniferum12.0720.0883.17101forward
CNT30643000Trifolium pratenseCannabis sativa22.8276.486.39191forward
CNT3034293Trifolium pratenseTheobroma cacao15.2956.6489.84128forward
CNT3038844Trifolium pratenseCucumis melo18.421.4588.31154forward
CNT30604727Trifolium pratenseOryza punctata13.8643.4585.34116forward

Expression of CNT30171766

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLCVTSHSRFKSSTKVLIRTHDCIMSSSICWCLEN*

>peptide 2 (57 aa)
PTKAYSLRLSSLENTPFNGILISITKSSLTHILVSQLDSLHIILFLDKQVTILQQLF*

>peptide 3 (34 aa)
MTENSGADTNTVFPSRSPVELLHTSVTNERSIKC*

Sequence

>CNT30171766
CTCCAACAAAGGCCTATAGTTTAAGACTCTCCAGTTTAGAAAACACCCCTTTTAATGGCATCTTGATTAGCATCACCAAGAGCAGCCTCACTCATATACT
TGTCAGCCAATTGGACTCTCTTCACATTATCTTGTTCTTGGACAAGCAAGTTACCATACTCCAACAGCTTTTCTAGTGTCATTGCTGGTTGATCAAATGT
TGGTGGTCCTTCCTTTGAGTTCACAAGCTTCTTTCCAATGGTGTCAACAAGCTTGACAATGTCGTCTTTTTCGATTTTGTCATGACGGAAAATTCCGGTG
CAGACACCAATACGGTCTTCCCTAGTAGGAGCCCAGTAGAACTTCTCCATACGTCCGTCACGAATGAGAGGAGCATAAAGTGTTGAGAAATCGTTACCAG
TGACAATGATGGGAACACGAGCGTTCTCTTCCTTGTTGTACATACCGGGGAGAGCAATGTAAAAACCATCCATAGTGTTGTCAAAGTCGTACCTAAAACA
ACGTCATCACAAATATTAGATTAAAAGAAACATCATTGCCAAACCATAATACTTTCTCTCATCTCAATAGTTATTCATTGAACCTGAAAAATGAATCTTT
GCTTATGAGACCAGAGGGAGTAACAAACTCATGAACTAAATTAACGGCATGTTATGTGTAACAAGTCACTCACGTTTTAAGTCCAGTACTAAGGTACTCA
TAAGAACTCATGACTGCATAATGAGTTCCAGCATCTGCTGGTGCTTGGAAAACTGAATCAACCATACCCTTTCCTCTTGTGATATCTTGTTGATCATCTG
AAGTATCATAGGCCAAACCTCTCCATCTGTCTCCGTC