Detailed information on CNT30171710


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40281|RCA_MALDO, E-value = 4e-43

BLAST vs NONCODE:
NONTCAT000366, E-value = 6e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698101Trifolium pratenseQuercus lobata76.9232.3183.5200forward
CNT30727554Trifolium pratenseCorchorus capsularis4533.5290.6117forward
CNT30379330Trifolium pratenseManihot esculenta88.4645.4583.91230forward
CNT3097189Trifolium pratenseSolanum tuberosum41.1514.2983.18107forward
CNT30562839Trifolium pratenseActinidia chinensis8033.0780.77208forward
CNT30309961Trifolium pratenseCamelina sativa78.8535.4180205forward
CNT30261873Trifolium pratenseBrassica rapa50.7747.3180.3132forward
CNT30213268Trifolium pratenseHelianthus annuus80.7711.3984.76210forward

Expression of CNT30171710

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLVVLPLSSQASFQWFQHQHQKSTSSLRHRTL*

>peptide 2 (44 aa)
KAYSLRLSTASLIYLSANWTLFTLSCSWTSKLPYSNSFSSVIAG*

Sequence

>CNT30171710
CAAAGGCCTATAGTTTAAGACTCTCCACAGCCTCACTCATATACTTGTCAGCCAATTGGACTCTCTTCACATTATCTTGTTCTTGGACAAGCAAGTTACC
ATACTCCAACAGCTTTTCTAGTGTCATTGCTGGTTGATCAAATGTTGGTGGTCCTTCCTTTGAGTTCACAAGCTTCTTTCCAATGGTTTCAACACCAACA
CCAGAAATCCACTTCCTCACTTCGTCATCGTACACTCTAGCCCTCAATGCACCGAAGAAA