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Detailed information on CNT30171046


BLAST search results

BLAST vs Swiss-Prot:
sp|O65819|H2B3_SOLLC, E-value = 1e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Trifolium pratenseOryza sativa55.4931.1280.2197forward
CNT30671420Trifolium pratenseSetaria viridis33.5241.6184.87119forward
CNT30522992Trifolium pratenseSetaria italica36.0619.4882.81128forward
CNT30315505Trifolium pratenseCorylus avellana50.4239.1784.36179forward
CNT30518188Trifolium pratenseJuglans regia8032.2483.45284forward
CNT30618877Trifolium pratenseSesamum indicum76.6234.5683.46272forward
CNT3072234Trifolium pratenseQuercus suber50.4228.4184.36179forward
CNT30630598Trifolium pratenseVigna unguiculata72.3946.1486.77257forward
CNT30181099Trifolium pratenseSecale cereale77.7534.1680.07276forward
CNT30284074Trifolium pratenseTriticum aestivum77.7546.2380.07276forward
CNT30220727Trifolium pratenseHordeum vulgare77.7535.3880.43276forward
CNT30396055Trifolium pratenseTriticum turgidum77.7533.7879.71276forward
CNT30565715Trifolium pratenseActinidia chinensis80.5636.4384.62286forward
CNT30586986Trifolium pratenseMusa acuminata74.9375.1481.95266forward
CNT3086649Trifolium pratenseVigna radiata75.7736.0687.36269forward
CNT30510004Trifolium pratenseSolanum lycopersicum33.2438.6985.59118forward
CNT30552027Trifolium pratenseOryza glaberrima74.0848.7979.85263forward
CNT30443203Trifolium pratenseAegilops tauschii83.9445.4379.53298forward
CNT30240953Trifolium pratenseAvena sativa77.4641.5480.36275forward
CNT30660053Trifolium pratenseTriticum dicoccoides83.9444.9579.87298forward
CNT30597299Trifolium pratenseFraxinus excelsior80.8552.2885.37287forward
CNT30447591Trifolium pratenseSaccharum spontaneum77.7550.6480.07276forward
CNT30130711Trifolium pratenseLolium perenne76.940.1579.85273forward
CNT30231835Trifolium pratenseAnanas comosus33.5218.3184.03119forward
CNT3066775Trifolium pratenseLeersia perrieri33.5230.9984.03119forward
CNT30205622Trifolium pratenseHelianthus annuus28.4537.4188.12101forward
CNT30129800Trifolium pratenseCorymbia citriodora84.2337.1484.28299forward
CNT30684130Trifolium pratenseTriticum urartu77.7538.0779.71276forward
CNT30722585Trifolium pratenseTriticum spelta77.7537.6579.71276forward
CNT30346527Trifolium pratenseEragrostis tef14.0823.79050forward
CNT30363575Trifolium pratenseSorghum bicolor69.0126.5778.78245forward
CNT30619778Trifolium pratenseCajanus cajan38.8720.8586.23138forward
CNT30369169Trifolium pratenseOryza glumipatula77.7548.1781.88276forward
CNT30570929Trifolium pratenseVitis vinifera87.8946.585.26312forward
CNT3052765Trifolium pratenseAmborella trichopoda44.5131.187.34158forward
CNT30108786Trifolium pratenseOryza longistaminata20.852.1989.1974forward
CNT30327286Trifolium pratenseAsparagus officinalis78.5930.8681.72279forward
CNT30101075Trifolium pratenseOryza rufipogon38.5919.5483.21137forward
CNT30576366Trifolium pratenseOryza barthii36.0624.4384.38128forward
CNT30496069Trifolium pratenseDigitaria exilis77.7534.5980.07276forward
CNT30174435Trifolium pratenseVigna angularis63.133.4387.95224forward
CNT30557628Trifolium pratensePanicum hallii32.6820.8381.9116forward
CNT3065708Trifolium pratenseSelaginella moellendorffii35.2136.0280.8125forward
CNT30114697Trifolium pratenseEutrema salsugineum86.4850.0886.32307forward

Expression of CNT30171046

Peptides detected in this lncRNA

>peptide 1 (49 aa)
PKSNKTIQELVNFVTALVPSETACLASSPGRTRRTAVWISREVMVGFLL*

Sequence

>CNT30171046
CCTAAATCAAATAAAACTATTCAAGAGCTAGTGAATTTCGTGACAGCCTTGGTTCCTTCGGAGACGGCGTGCTTAGCAAGCTCGCCGGGAAGAACAAGAC
GAACAGCAGTCTGGATCTCGCGAGAAGTGATGGTAGGCTTCTTGTTGTAACGAGCGAGTCTAGAAGATTCCTGAGCGAGTTTCTCAAAGATATCATTGAT
GAAACTGTTCATGATTCCCATAGCCTTGCTTGAGATTCCGATATCAGGATGAACCTGCTTCAAAACCTTGAAGATGTAGATCTTGTAGGTTTCTACGCTC
TTCTTGTGTTTCTTCTTCTTCTTATCGGTGGATGAGGCTTCCTTTGGAATCTTCT