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Detailed information on CNT30165865


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 5e-164

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547182Pistacia veraIpomoea triloba79.5569.0784.98739forward
CNT30574249Pistacia veraVitis vinifera60.656.6484.37563forward
CNT3064718Pistacia veraSelaginella moellendorffii60.0680.5284.05558forward

Expression of CNT30165865

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVIVFPVSVLTKICMPPRRRRTRWSVDSFWML*

>peptide 2 (40 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTRCRVDSFWML*

>peptide 3 (52 aa)
LLIRWNPLLVLNLCLHIINRIGALHLQRNSLSGQRLHKYLHTSPQTQHQMKC*

>peptide 4 (38 aa)
MERGLLLDVVVGQSSAVFELLAGKDQTLLVWVDSFCML*

Sequence

>CNT30165865
CTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGAATCTTTGCCTTCACATTATCAATCGTATCGGAGCTCTCCACCTCCAACGTAATAGTCTTTCCGG
TCAACGTCTTCACAAATATCTGCATACCTCCCCTCAAACGCAGCACCAAATGAAGTGTTGACTCCTTTTGGATGTTGTAATCCGCCAGGGTCCTCCCATC
CTCCAGTTGCTTTCCTGCAAAAATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATGGTGTCGGAGCTC
TCTACCTCAAGAGTAATGGTCTTTCCGGTGAGGGTTTTGACGAAAATCTGCATTCCTCCACGGAGACGGAGGACGAGGTGTAGAGTTGACTCCTTCTGGA
TGTTGTAATCGGCCAAAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGTATCTTGGC
CTTGACGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTGATTGTCTTTCCGGTGAGTGTTTTGACAAAGATTTGCATGCCTCCACGGAGACGGAGG
ACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCGAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGT
TGACTCCTTCTGTATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGTGGGATCCCTTCCTTA
TCCTGAATCTTTGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTAATGGTCTTGCCGGTCAAAGTTTTCACAAAGATCTGCATCTGAA
ACCATAAAAAATAGCACAAGCAAACAAAT