« Back to Pistacia vera search


Detailed information on CNT30163753


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30507162Pistacia veraNicotiana attenuata4.2737.4487.3479reverse complement

Expression of CNT30163753

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MNKMVIVLISKTVIKSCNKDQDNTLLQNKKRHLFLIRIHNKVITLIPTTN*

>peptide 2 (46 aa)
MIKNSSGSADRERKRKRELLLCLNSSTQPRRVLGTGSLDSRVLMLLM

Sequence

>CNT30163753
CTCAGTAGTTCCAATCTTAAGTTGTAGGATTTGCCAAAAACCATATCATCAAACTGATCATATTTTGGTCATTTGAAACATTATATACATTTGTAATAAC
AACTCACTTATTCCCTTAACAAAAATAAATATAATCAAAACATTATAACATCAGTGATAAATGTAATAACTCGATCATCATACATCTCTCAACTCAACCA
ACATTTGACCAAAACCATAAACTTTACTTCGCAAAAAGCTTAGTACTCTTCAGTGCCAACTGAAATGAACAAAATGGTTATTGTATTAATTAGCAAAACA
GTCATTAAAAGCTGCAACAAAGATCAAGATAATACACTACTCCAGAATAAAAAAAGGCATTTATTTCTAATTCGAATACATAACAAAGTCATAACCCTAA
TTCCAACAACTAATTAATTCAATAGCCCTTCTGACTGTTTTGCTAATTAATTGTGCAGTAGTAGTTCACAGATCCACGAGAAATAGGTTTAAATTATCAG
CTTCAAATTGTGGCTCCTGAATCAACTCGATCCCAAAGCTTCCACAAAAAGAATGGATCTGCAAAAGAAAAAAAAACATTGACCTAAAACAGCATTAAAA
AAAATCAATACCTGAAGAGGTTAAATGTATAGATATATATATAGAGAGGAAGAAAGTAATTAAGAAGGAGAAGTGTAGAGCTCCCTTCAATCCAAACAAG
GATCTAACATAGGGTAATGCAGCTCCTGGGATATGCAAGCCACAAGCCTATCTTCCAATAACGGGGGGATAGGGCTGTGGGATCCATAGCTCAGCAGCTC
AATCAACCCTGCAACACCCTCTATTGGACTTCAAGCAACTCTACTCTCTAACCCTCCTCTCTCTTAAACCCTAATCATCAACCTAAACAAAACCACAAAC
CCTATCTCCTCTTCTAACATTATTTGCAAATAAACCCTCGCTACCAAATCCTTGTTCTTTCTTATTATTGTTAGCTTCAGATTTAACATTTTAGGAAGCA
GATGATAAAATATTTTCTAATACTAGCTAGAACAGGAAACAACTAAGAAAACAAACACAAAGTCTCTCTTCTCCTATATAGAATGGATTCTTTGATCTAC
TTTTCTGAATCAAGAAAAAAGAGTTAACAGGGAAGAGCTAGAATACACAAGGCAAGATCCCAGTAAATCCCGAGCGAGCATAAAGAAGAAGAAAAGAGGA
AAGAAGAAAGAAAACCCTAGTCAGGACTCAGGATCAGTTCATTACCAACAATAAACAGATCACAAGATCTCTAGTTGATCTTCTCAAATGAAAGAGCAAA
AAGAAAAAAGAGAGAGAGAGCGAGAGAGAGAGCGAGAGAAAGAGAGGTGCGCATGCATCCTGAATCATTGAAGAATTAACCCCATAGATCCAGGCTATCC
ATACAAACAAACCCTAAACAATTTCAAAGTCAACAGCAAACTAAACTAATAGTACCAGATACAGGAACAAACCCTAGACTGTTTTGCAGCATAGCTGCAA
CAAGCAGCTGAACCCTAGACACAAAAAATCAAAACCATCCAAAAAAATTTAAAAAAAACAGTCAAGAACTATCCTTGAAACCTATCACAAACAACCCATC
TCTAACCCTAAAAACCAACACCAACCACTGGTTGGAAACACCATAAACCATAAAAAGCAACTTTGGTATGGAGATGAGGTTGATAGGAGGCAATTTATAG
TGCTTCGGGATATGATAAAGAATAGTAGTGGGTCGGCAGATAGAGAGAGAAAGAGAAAGAGAGAGCTGTTGCTTTGCCTCAACAGCTCAACCCAACCCCG
AAGAGTCTTGGGAACCGGCTCCTTAGATTCCCGCGTGTTGATGCTGTTGATG