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Detailed information on CNT30163372


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SI96|H2B3_ARATH, E-value = 2e-52

BLAST vs NONCODE:
NONMEST003205, E-value = 9e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Pistacia veraOryza sativa20.1418.3382.76116forward
CNT30675823Pistacia veraSetaria viridis20.1426.7382.76116forward
CNT30522940Pistacia veraSetaria italica20.1416.4882.76116forward
CNT30315505Pistacia veraCorylus avellana26.0432.8280.67150forward
CNT3072231Pistacia veraQuercus suber20.1420.4684.48116forward
CNT30526697Pistacia veraPhaseolus vulgaris43.0694.380.24248forward
CNT30179138Pistacia veraSecale cereale20.1414.3782.76116forward
CNT30285319Pistacia veraTriticum aestivum20.1416.9683.62116forward
CNT30220711Pistacia veraHordeum vulgare20.1411.282.76116forward
CNT30553165Pistacia veraOryza glaberrima20.1425.2284.48116forward
CNT30172842Pistacia veraTrifolium pratense41.4943.1484.94239forward
CNT30435607Pistacia veraAegilops tauschii20.1414.7682.76116forward
CNT30656000Pistacia veraTriticum dicoccoides20.1419.8682.76116forward
CNT30457159Pistacia veraSaccharum spontaneum20.1413.9183.62116forward
CNT303693Pistacia veraZea mays20.1433.6282.76116forward
CNT30610418Pistacia veraGossypium raimondii49.8329.8382.58287forward
CNT30684878Pistacia veraTriticum urartu20.1412.8583.62116forward
CNT30719869Pistacia veraTriticum spelta20.1420.3282.76116forward
CNT30346527Pistacia veraEragrostis tef18.5850.7183.18107forward
CNT30363575Pistacia veraSorghum bicolor20.1412.5881.9116forward
CNT30619778Pistacia veraCajanus cajan28.1224.4782.1162forward
CNT30596761Pistacia veraOryza meridionalis20.1414.6881.03116forward
CNT30369782Pistacia veraOryza glumipatula20.1418.2183.62116forward
CNT3052765Pistacia veraAmborella trichopoda20.1422.8387.07116forward
CNT3024557Pistacia veraPopulus trichocarpa49.8355.4182.58287forward
CNT30101075Pistacia veraOryza rufipogon20.1416.5584.48116forward
CNT30574682Pistacia veraOryza barthii20.1416.9682.76116forward
CNT30496069Pistacia veraDigitaria exilis20.1414.5482.76116forward
CNT30176425Pistacia veraVigna angularis20.6614.288.24119forward
CNT30557628Pistacia veraPanicum hallii20.1420.8382.76116forward
CNT30724478Pistacia veraLupinus angustifolius22.2221.2382.03128forward

Expression of CNT30163372

Peptides detected in this lncRNA

>peptide 1 (61 aa)
GLGTLRNSVLSQLARKYKSHSCLNFPRSNSGLFVVPCQPGGFLSKLLEDIVDETVHDSHSF*

Sequence

>CNT30163372
CGGCCTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCGCCAGGAAGTACAAGTCTCACAGCTGTCTGAATTTCCCGAGAAGTAATAGTGGGCTTTTT
GTTGTACCTTGCCAACCTGGAGGCTTCTTGAGCAAGCTTCTCGAAGATATCGTTGATGAAACTGTTCATGATTCCCATAGCTTTTGAAGAGATTCCGATA
TCAGGGTGGACTTGTTTCAGGACTTTGAAGATGTAGATCTTGTATGTCTCAGTACTCTTCTTCACGCGCTTCTTCTTCTTGTCTCCGGCCGCGGCCTCCT
TCGGCAACTTCTTTCCGGCCTTAGGCTTCTTCTCAGCTGTACTCTTCTTCACGCGCTTCTTCTTCTTGTCTCCGGCCGCGGCCTCCTTCGGCAACTTCTT
TCCGGCCTTAGGCTTCTTCTCAGCTGGTGCCTTCTCTGCCACCGAAGTTTTCTTCTCCTCGGCTGGCTTCTTCTCAGCAGGTTTCTTCTCTGCCTTGGGA
GCCATTAAAATTGATTTTTTGCGGGTAAATTGAAAAAACTAGGGTTTGGATATTTTCTTTCGTGTTTGGATGAGAA