Detailed information on CNT3016300


BLAST search results

BLAST vs Swiss-Prot:
sp|P04711|CAPP1_MAIZE, E-value = 6e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521394Zea maysSetaria italica59.9410.2887.06371forward
CNT30193220Zea maysSecale cereale36.3525.489.78225forward
CNT30368424Zea maysSorghum bicolor60.920.6992.84377forward
CNT30583511Zea maysEchinochloa crusgalli3725.9989.96229forward
CNT30497176Zea maysDigitaria exilis3722.7989.52229forward
CNT30557292Zea maysPanicum hallii37.1629.4989.57230forward

Expression of CNT3016300

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MTSAISSVWGRSGGSSGRLPRSSDSSHSCLLSSGHSRYDPMPRCVVMASITSVCRSDSCRMSSFTRESPNVNTWRRRSRRLPSAMALSPQSHSDL*

>peptide 2 (59 aa)
MPAAMPFMVRMSVSSRPGGYSLAGFSLTSPAGLFSSANSLDSGGWGVTLKLGSLIRFSV*

Sequence

>CNT3016300
GTGCACTCTGCAGGTGAGTGAAGAGAAGCCGCCTAGCCAGTGTTCTGCATGCCGGCGGCGATGCCCTTCATGGTGAGGATGAGCGTGTCTTCCAGGCCGG
GCGGGTACTCGCTCGCCGGGTTCAGCTTGACCAGTCCGGCGGGCTTGTTCTCGTCGGCGAACTCCTTGGACAGCGGCGGCTGGGGCGTCACCTTGAAGTT
GGGGTCCCTTATCCGCTTCAGCGTGTAGGCCTGGAACACGTTCAGGGTGATGATGTAGGGGCCGAAGCTGTCGGGCGGGAGCTCCGCGAGGACGTGGAAC
GCGCCGATGACGTCGGCGATCTCGTCGGTCTGGGGAAGGTCCGGGGGCAGCAGCGGGCGCTTGCCTCGCAGCTCCGACAGCAGCCACTCCTGCCTCTTGT
CCTCGGGCCACTCGCGGTACGACCCGATGCCGAGGTGCGTGGTGATGGCGTCGATCACGTCGGTGTGCCGCTCCGACTCCTGCCGGATGTCCAGCTTCAC
CAGGGAGAGCCCGAACGTGAACACCTGGCGCAGGAGGTCCAGGAGGCTCCCGTCCGCGATGGCCTTGTCGCCGCAGTCACACAGTGATTTGTAGCACAGC
TCAAGTGGCTCAAGGAACT