Detailed information on CNT3016288


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30474298Zea maysSaccharum spontaneum88.9759.4388.7460forward
CNT30140847Zea maysLolium perenne40.0436.3287.44207forward
CNT30368405Zea maysSorghum bicolor88.3935.9688.62457forward
CNT30148536Zea maysBrachypodium distachyon16.8340.6590.887forward

Expression of CNT3016288

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVNKSIQWAGILINYYKTACRLYDVYYYNMYNMPRFSTWT*

>peptide 2 (54 aa)
MFIITICIICQDFPLGLDNKSEYKEAGNYICIGKTDAASSAFPSKTDKTPPSGS*

>peptide 3 (59 aa)
MPAAMPFMVRMSVSSRPGGYSLAGFSLTSPAGLFSSANSLDSGGWGVTLKLGSLIRFSV*

Sequence

>CNT3016288
TGGCTGAAGTAACACCATGGTAAACAAGTCCATCCAATGGGCTGGGATATTAATTAATTATTACAAAACAGCATGCAGATTGTACGATGTTTATTATTAC
AATATGTATAATATGCCAAGATTTTCCACTTGGACTTGACAACAAGAGTGAATATAAAGAGGCAGGAAATTACATATGCATAGGGAAAACAGACGCTGCC
AGTTCGGCATTTCCATCCAAAACTGACAAAACGCCACCATCCGGAAGCTGATTATTGCGGTGCACTCTGCAGGTGAGTGAAGAGAAGCCGCCTAGCCAGT
GTTCTGCATGCCGGCGGCGATGCCCTTCATGGTGAGGATGAGCGTGTCTTCCAGGCCGGGCGGGTACTCGCTCGCCGGGTTCAGCTTGACCAGTCCGGCG
GGCTTGTTCTCGTCGGCGAACTCCTTGGACAGCGGCGGCTGGGGCGTCACCTTGAAGTTGGGGTCCCTTATCCGCTTCAGCGTGTAGGCCTGGAACACGT
TCAGGCTTGTCCCTTAC