Detailed information on CNT30157163


BLAST search results

BLAST vs Swiss-Prot:
sp|P51851|PDC2_PEA, E-value = 6e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534838Pistacia veraEucalyptus grandis60.8250.5779.78267forward
CNT30378612Pistacia veraArabidopsis thaliana30.5243.2382.84134forward
CNT3021436Pistacia veraCitrullus lanatus45.3361.881.41199forward
CNT30562763Pistacia veraActinidia chinensis66.0663.1878.62290forward
CNT30146603Pistacia veraMedicago truncatula43.0549.8784.13189forward
CNT30128751Pistacia veraCorymbia citriodora61.0552.6580.6268forward
CNT30355647Pistacia veraLactuca sativa29.1619.1684.38128forward
CNT30154533Pistacia veraPrunus persica29.8429.8486.26131forward
CNT30706321Pistacia veraPrunus avium58.7746.7484.11258forward
CNT3026328Pistacia veraPopulus trichocarpa65.3854.3685.02287forward
CNT30113754Pistacia veraFicus carica79.0484.8478.67347forward

Expression of CNT30157163

Peptides detected in this lncRNA

>peptide 1 (45 aa)
RFQSAFRKSFIKTHPNAVPFTITTRSGWRMIAFSSFRRRGYPTEL*

>peptide 2 (85 aa)
LSKCFQEILHQNTPKCSSIHNNNTIRLENDCLLFLQKKRVSNRAIVIKYRSRKQISICRFHNFSTKSCAHCIPVSSNKMGMMLWH*

Sequence

>CNT30157163
CGCTTTCAAAGTGCTTTCAGGAAATCCTTCATCAAAACACACCCAAATGCAGTTCCATTCACAATAACAACACGATCAGGCTGGAGAATGATTGCCTTCT
CTTCCTTCAGAAGAAGAGGGTATCCAACAGAGCTATAGTCATTAAATATAGGTCCCGCAAACAAATAAGCATCTGCAGATTCCACAATTTCAGCACAAAA
AGCTGTGCTCACTGCATCCCAGTAAGTTCCAATAAAATGGGGATGATGCTCTGGCACTAGCCCTTTTGCCGAAGGCATCACCGCAAGGGCATAACCACAA
GCATCAGCAAGCTCAACAAAAGCATCAGATACCTAGGCAACTCTCAGCTTAGGTCCACCAACCAACACTGGTTTCACTGCCTTGTTCAAGAACTCTACTG
TTACCTCAACTGCAGCCTCCAAGCCCATCTTATTACTCA