Detailed information on CNT3015270


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 3e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Zea maysSetaria viridis33.1172.1296150forward
CNT30547527Zea maysIpomoea triloba22.323.3386.14101forward
CNT3019597Zea maysCitrullus lanatus50.7730.7582.17230forward
CNT3059659Zea maysArabidopsis lyrata86.0989.8679.49390forward
CNT30345702Zea maysEragrostis tef56.2931.5688.63255forward
CNT30154011Zea maysPrunus persica13.4721.7188.5261forward
CNT30332479Zea maysDioscorea rotundata50.7781.2783.04230forward
CNT30149525Zea maysBrachypodium distachyon24.536.7589.19111forward
CNT30100260Zea maysOryza rufipogon43.0527.1692.31195forward
CNT3050899Zea maysCucumis sativus32.4558.3382.31147forward

Expression of CNT3015270

Peptides detected in this lncRNA

>peptide 1 (50 aa)
SCGYPAPAGQPGSQPPKDPSPSCPSGQTHTGGTPDQRLQPSAGLRTQRTR*

>peptide 2 (34 aa)
LLRISSTSWAAWEPASKGSEPIMSQWSNTHWGNA*

>peptide 3 (29 aa)
MKNDITDLEANPAHVLFSQCTLLRCPLETS

>peptide 4 (44 aa)
PLADIQHQLGSLGASLQRIRAHHVPVVKHTLGERLTRGCSPQLA*

Sequence

>CNT3015270
CCTCTTGCGGATATCCAGCACCAGCTGGGCAGCCTGGGAGCCAGCCTCCAAAGGATCCGAGCCCATCATGTCCCAGTGGTCAAACACACACTGGGGGAAC
GCCTGACCAGAGGTTGCAGCCCTCAGCTGGCTTGAGAACCCAAAGGACTCGATGACAGGGAGGAAAGCCTTGATGTTGTAGAGCGGGGTACCAGGCCTTT
GCATCTCCTCGAATACATGTCCTCTCTTCTGGTTCAGAACACCGTATATGCCACCAAGTAAACTGGTTCCAGCAGCCTCGGCTTGGCTGTGAGCTGAGAA
GCATAAATGACCCTCCTGGCAGTTGGAATGACCTGGCCACCACCCCTGTGGATAGCATCGGCATGAAGAACGACATCACAGACCTCGAAGCAAATCCCGC
GCATGTTCTCTTCAGCCAGTGCACCCTCCTTCGATGCCCACTGGAAACCAGCC