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Detailed information on CNT30151313


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30562499Brachypodium distachyonActinidia chinensis33.1270.7283.44157forward
CNT30232050Brachypodium distachyonAnanas comosus33.5413.9693.08159forward
CNT30620437Brachypodium distachyonCajanus cajan25.3216.8390120forward

Expression of CNT30151313

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MVLPSRHIKSSKEIDETAQEARRPPEGAQGHLLLLQRYDFWNLARAPRPPNFLGSQRRGSATSPLAMAWRMA*

>peptide 2 (44 aa)
QDTQVPTILKPLTKDQLKPKLSMNRSSDSRKLNRIIKFSTSIII*

>peptide 3 (76 aa)
MRQPKRRAVRRRERRGIFFFFNGTTSGTWHGRRDRRTSWARSGGGRRRAPWRWPGGWRRSATSSRRRGRGSACRCP*

Sequence

>CNT30151313
AACAGGATACTCAAGTCCCAACTATCCTTAAACCATTAACTAAAGATCAGCTTAAACCAAAATTAAGCATGAACAGATCAAGCGATTCAAGGAAACTCAA
CAGGATAATTAAGTTCTCAACTAGCATCATCATTTAACATAATCTTAACATAACATGGTCCTTCCATCTAGGCATATAAAAAGCAGTAAAGAGATAGATG
AGACAGCCCAAGAGGCGCGCCGTCCGCCGGAGGGAGCGCAGGGGCATCTTCTTCTTCTTCAACGGTACGACTTCTGGAACCTGGCACGGGCGCCGCGACC
GCCGAACTTCTTGGGCTCGCAGCGGCGGGGGTCGGCGACGAGCCCCTTGGCGATGGCCTGGCGGATGGCGTAGATCTGCGACGTCTTCCCGCCGCCGCGG
ACGCGGATCCGCATGTCGATGTCCTTGAACCGAGACCGGCCGGCCAGCAGGATCGGCTCGAAAGCCTTGAGGCG