Detailed information on CNT30150628


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30471101Brachypodium distachyonSaccharum spontaneum14.534.6183.68190forward

Expression of CNT30150628

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSSSLSASNSSTSLTWLSMNHCICSFLHSIEWIKIDDVSLLQKTGA*

>peptide 2 (69 aa)
KSLLAQQFVDQLEFCWTDDATSLDGIEALKNSEEERNDTIILICLVEGRDFHSKLTARLTLVLAHATDT*

>peptide 3 (40 aa)
MTYHYCRRLVHDIVEGNKNNIAQLRHSSGTGTFPSRSNIS*

>peptide 4 (46 aa)
MLLFGFTPDKDVLLHSLPKFLGNITQGFFYCFRVLLCLHHLVLQII*

>peptide 5 (36 aa)
MGFNEFISFSLELLHILDLAIYEPLYLFFPAQHRMD*

>peptide 6 (34 aa)
MAVLHCRKLTLTADLINVENALRMCVRRKYIRLV*

>peptide 7 (34 aa)
MFSCIVSRSFWVTLPRVSSTALECCCVFTTLFFR*

Sequence

>CNT30150628
GAAGAGCTTACTTGCCCAGCAGTTTGTAGATCAATTGGAATTTTGCTGGACAGACGATGCCACAAGTCTCGATGGAATTGAGGCATTAAAAAATTCTGAA
GAAGAGCGAAATGATACGATAATATTGATATGTCTGGTAGAGGGTAGGGATTTTCATTCCAAGCTTACTGCAAGGTTGACATTGGTTCTAGCACATGCTA
CTGATACTTGACACCTATAAAGGTTCAGGTTTCCTAATCATGGCACTTTAGAAGCCGTTGCCCAGAAGGATCATCTCAGACATTCGTTCTGAGCTGGAAA
TGTACGGTGATCTTCACGAGCTTTGGCCCCAAAGGTGCCTGGCTTGTGTTTCTCCATCAGACTAGTGACGGCGGCATCAAGCTCCTTCTCCAGCTCCAGC
TCCTTAGCCATATACTCTTTCTTGAGCTTCACCTTCTTCTCCTCATGGGCTTTAATGAGTTCATCTCTTTCAGCCTCGAACTCCTCCACATCCTTGACCT
GGCTATCTATGAACCACTGTATCTGTTCTTTCCTGCACAGCATAGAATGGATTAAAATAGATGACGTATCACTATTGCAGAAGACTGGTGCATGACATTG
TTGAAGGAAATAAAAACAATATTGCACAATTAAGACATTCATCTGGAACTGGAACATTCCCATCCCGATCAAACATTTCATGATTAGCTACATAGAGGAA
TTATTAATCCACGCATTTTTCATGATGTGGACTGGTACACAACCAAGTACCAGTTACGCACCTTAGTCTACGATTTTCAGTAGTCCCAGAATCCACATCA
CACTGTCTAGCCTTTGCACGCTCCTCCTGTAGCAACTTCTCAAACTTGCTCTCTTTCTCCTCTGTGGCCTTGTGAATGTTTTCGATCTGATCATGGAAAA
ATTTCTCCTGAGACTTCATCTGCAAATATAGAAACTCAAGGTGACCAAAAGGTGATAAAATCAAACCAAGGAAAGGATAACGCAAGTCAAAATGGCAGTT
CTGCATTGCAGAAAGCTGACGCTCACAGCAGATTTAATCAATGTTGAGAATGCCTTGCGTATGTGTGTTCGCAGAAAATATATAAGATTAGTGTAACCTT
CAATCAGATTACCTCTTCTTCGTATTCTGAATGCTTCTCTTTGGCTTTACGCCTGACAAAGATGTTCTCTTGCATAGTCTCCCGAAGTTTCTGGGTAACA
TTACCCAGGGTTTCTTCTACTGCTTTAGAGTGTTGCTGTGTCTTCACCACCTTGTTCTTCAGATAATTTAGTTGTTGGTTCTCTTCGCTCATTAGTTTCA
TCTGCTCCAC