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Detailed information on CNT30150571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552520Brachypodium distachyonOryza glaberrima29.8116.9785.42240forward
CNT30108659Brachypodium distachyonOryza longistaminata29.8135.0485.42240forward
CNT30100206Brachypodium distachyonOryza rufipogon29.8116.2885240forward
CNT30575121Brachypodium distachyonOryza barthii29.8132.6585.42240forward

Expression of CNT30150571

Peptides detected in this lncRNA

>peptide 1 (99 aa)
GGRRLVPSTSWPGAALAPAPWRRVVYEQLHSTSNQAHCISPAGQRRGRGGSREEALPRSRRACGAAVPVTDQRSRCRFGSGQGAIDRRRARLVAGEVRE*

>peptide 2 (39 aa)
MHCVVKDCAYWFGKCRSVDPGGGVLSSLIKALFLLPLCI*

>peptide 3 (43 aa)
MSNCTAQVTKRTASAQPGRGEEEGEAGKKLYLEADELVVLPCP*

>peptide 4 (48 aa)
MSIRQRARRDRPATGSIGGRGGERVIPLDVTAIFIEGTAEYIPEAFSR*

Sequence

>CNT30150571
GGCGGGCGGAGGCTCGTGCCGTCGACGTCCTGGCCCGGCGCGGCGCTCGCGCCCGCACCATGGCGGCGCGTAGTATATGAGCAATTGCACAGCACAAGTA
ACCAAGCGCACTGCATCAGCCCAGCCGGGCAGAGGAGAGGAAGAGGGGGAAGCCGGGAAGAAGCTTTACCTCGAAGCAGACGAGCTTGTGGTGCTGCCGT
GCCCGTGACGGATCAGAGGAGTCGATGTCGATTCGGCAGCGGGCAAGGCGCGATCGACCGGCGACGGGCTCGATTGGTGGCAGGGGAGGTGAGAGAGTGA
TCCCCTTGGATGTGACCGCGATATTCATCGAGGGCACAGCAGAGTACATCCCAGAAGCTTTTTCTCGGTAGAAGACTGTTCGCTCAACTTCTACAATTGG
TTGAACACATTGGCCATTCTGAATCCCAATGAAAATAACTGCTGCATACATGGATCCCAAAGAATTGAACAGTTGGGGTTGTCAGCAAAGGTACTTACAT
TTTCTTGCCTAAGTTCAAGAAGATGGTGCCGAAGATGAGGGCAATAACTGTCGTGAAGAATATCCTAGTTGCAGTGTAGGATGGATTTCTCCAGTATGAC
TTGTGCTGCTTCCACAGGCAAGCCATGCATTGTGTGGTAAAGGACTGTGCGTACTGGTTTGGGAAATGCAGGTCCGTCGATCCAGGTGGGGGTGTGCTTA
GTTCACTGATCAAAGCTTTGTTCCTCCTGCCATTATGCATTTGAATCCGTGAAATGAGAGAGAATAGCAAAAAATGTGAAACATCATTCTGGGACTGAAC
ATACC