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Detailed information on CNT30149646


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696621Brachypodium distachyonOryza sativa48.627.1683.52261forward
CNT30677535Brachypodium distachyonSetaria viridis26.8268.984.03144forward
CNT30283765Brachypodium distachyonTriticum aestivum69.8383.8983.73375forward
CNT30384857Brachypodium distachyonTriticum turgidum33.3342.2285.47179forward
CNT30435716Brachypodium distachyonAegilops tauschii69.8348.9682.93375forward
CNT30239672Brachypodium distachyonAvena sativa58.8543.3587.66316forward
CNT30679142Brachypodium distachyonTriticum urartu69.6536.6784.22374forward
CNT30361318Brachypodium distachyonSorghum bicolor24.0221.3681.4129forward
CNT30596968Brachypodium distachyonOryza meridionalis48.657.6283.14261forward
CNT30103572Brachypodium distachyonOryza rufipogon48.624.5183.52261forward
CNT30577940Brachypodium distachyonOryza barthii48.632.2283.52261forward
CNT30498664Brachypodium distachyonDigitaria exilis27.9319.6680150forward

Expression of CNT30149646

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MVYHWQVSHILDHWQAFHIVNHWQVFHMVDQWQVFDMVNHWQAFHMGDWQAFRFA*

>peptide 2 (68 aa)
MASLRYGESLAGLPYGGLAGLPFCVNSLLGNISPRGPSEGARGRGLLPEPPSLRVLVLSLEAISVRASL

>peptide 3 (97 aa)
ISRHMVAIRTMGHIISTRTSRQGHFSSRQASRCYISVIRSREWSIASKRTSNRILSSFRKVIYRISRGRIMGFIGRSPIWYIIGRSPIYWIIGRHSI*

Sequence

>CNT30149646
CTATCAGTAGGCATATGGTTGCGATAAGAACGATGGGTCATATAATCAGCACCAGGACTAGCAGACAAGGGCATTTCTCTAGTAGGCAAGCGAGCAGATG
CTACATTTCTGTCATACGAAGCAGAGAGTGGAGCATTGCTAGCAAAAGGACTTCCAATAGGATACTCTCTTCTTTTAGAAAAGTAATCTATAGGATAAGC
AGAGGAAGGATCATGGGGTTTATTGGCAGGTCTCCCATATGGTATATCATTGGCAGGTCTCCCATATATTGGATCATTGGCAGGCATTCCATATAGTGAA
TCACTGGCAGGTCTTCCATATGGTTGATCAATGGCAAGTCTTCGATATGGTGAATCATTGGCAGGCCTTCCATATGGGGGATTGGCAGGCCTTCCGTTTT
GCGTGAATTCTCTGCTAGGAAATATATCACCACGAGGACCATCAGAAGGGGCAAGAGGCAGGGGATTATTGCCAGAACCTCCATCTCTGAGGGTCCTAGT
TCTAAGCCTTGAAGCAATTTCTGTGAGGGCGTCTCTT