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Detailed information on CNT30149479


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 4e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693639Brachypodium distachyonOryza sativa25.7110.3390.9199forward
CNT30673198Brachypodium distachyonSetaria viridis25.7143.4288.8999forward
CNT30521234Brachypodium distachyonSetaria italica25.7113.6988.8999forward
CNT30532753Brachypodium distachyonEucalyptus grandis25.7139.9284.8599forward
CNT30178026Brachypodium distachyonSecale cereale51.9535.8490.5200forward
CNT30285918Brachypodium distachyonTriticum aestivum45.4537.2389.71175forward
CNT30220389Brachypodium distachyonHordeum vulgare27.5324.2689.62106forward
CNT30384456Brachypodium distachyonTriticum turgidum45.4532.7190.86175forward
CNT30591852Brachypodium distachyonMusa acuminata21.319.6687.882forward
CNT30435366Brachypodium distachyonAegilops tauschii35.5830.1191.24137forward
CNT30240485Brachypodium distachyonAvena sativa51.1766.7893.4197forward
CNT30655703Brachypodium distachyonTriticum dicoccoides51.9555.7190200forward
CNT30131491Brachypodium distachyonLolium perenne51.1739.9694.42197forward
CNT3011150Brachypodium distachyonZea mays25.7111.785.8699forward
CNT30679155Brachypodium distachyonTriticum urartu51.9559.8890200forward
CNT30720193Brachypodium distachyonTriticum spelta29.0920.5186.61112forward
CNT30338878Brachypodium distachyonEragrostis tef25.7112.6986.8799forward
CNT30370255Brachypodium distachyonOryza glumipatula25.7115.5490.9199forward
CNT30318832Brachypodium distachyonAsparagus officinalis25.714.8585.8699forward
CNT30101773Brachypodium distachyonOryza rufipogon25.7112.0190.9199forward
CNT30582819Brachypodium distachyonEchinochloa crusgalli23.911.0289.1392forward
CNT30496965Brachypodium distachyonDigitaria exilis25.7129.1287.8899forward
CNT30116717Brachypodium distachyonOryza nivara25.7112.0490.9199forward
CNT30604129Brachypodium distachyonOryza punctata25.7115.7990.9199forward

Expression of CNT30149479

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MAPRRSGRTCSAARCKGTARRTRTGPTAPSCCRCRPGRSTRSSPRTSPAPRRLVQACRRTR

>peptide 2 (81 aa)
SRYADPWYTSTGICRNRFREREREKETETKALIKSDQILPRGPGVGGSCGPFLMGSRNLSSRPRLVNGAAKVWKNLLCSPL*

>peptide 3 (28 aa)
MSSRSKYTLFSPYFACTATPRAGLQAYAH

>peptide 4 (31 aa)
PDTQIHGTQAQAYAGTDSERERERKKLKPKL*

Sequence

>CNT30149479
GTCCAGATACGCAGATCCATGGTACACAAGCACAGGCATATGCAGGAACAGATTCAGAGAGAGAGAGAGAGAGAAAGAAACTGAAACCAAAGCTTTAATC
AAATCAGATCAGATCTTGCCGCGTGGGCCGGGGGTGGGGGGAAGCTGCGGCCCCTTCTTGATGGGCAGCAGGAACTTGAGCAGCAGGCCGCGCTTGGTGA
ATGGCGCCGCGAAGGTCTGGAAGAACTTGCTCTGCAGCCCGTTGTAAGGGGACGGCGCGTCGGACCCGTACAGGTCCCACTGCCCCGTCGTGTTGCCGAT
GTCGTCCAGGTCGAAGTACACGCTCTTCTCCCCGTACTTCGCCTGCACCGCGACGCCTCGTGCAGGCCTGCAGGCGTACGCGCAC