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Detailed information on CNT30149228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676366Brachypodium distachyonSetaria viridis27.5833.587.79131forward
CNT30517641Brachypodium distachyonJuglans regia89.2678.8180.9424forward
CNT30377662Brachypodium distachyonArabidopsis thaliana67.3735.480.62320forward
CNT30278532Brachypodium distachyonChenopodium quinoa76.8433.2181.37365forward
CNT30629341Brachypodium distachyonVigna unguiculata62.9527.3879.6299forward
CNT30709122Brachypodium distachyonGlycine max25.6834.6682.79122forward
CNT30164689Brachypodium distachyonPistacia vera40.8435.2782.47194forward
CNT30189101Brachypodium distachyonSecale cereale60.4227.3187.11287forward
CNT30397803Brachypodium distachyonTriticum turgidum59.1635.887.19281forward
CNT30561418Brachypodium distachyonActinidia chinensis90.7442.7679.35431forward
CNT30238817Brachypodium distachyonBrassica oleracea28.2125.1484.33134forward
CNT30144801Brachypodium distachyonMedicago truncatula33.0527.1682.8157forward
CNT30264134Brachypodium distachyonBrassica rapa58.1131.8381.52276forward
CNT30140632Brachypodium distachyonLolium perenne36.6385.2987.36174forward
CNT30605054Brachypodium distachyonGossypium raimondii72.2160.4979.88343forward
CNT30126269Brachypodium distachyonCorymbia citriodora19.3724.2782.6192forward
CNT30686114Brachypodium distachyonTriticum urartu49.6839.4688.56236forward
CNT30349705Brachypodium distachyonEragrostis tef57.8939.2386.91275forward
CNT30366134Brachypodium distachyonSorghum bicolor33.2625.0489.24158forward
CNT30120413Brachypodium distachyonCitrus clementina64.2137.783.28305forward
CNT3038556Brachypodium distachyonCucumis melo21.6813.0486.41103forward
CNT30585446Brachypodium distachyonEchinochloa crusgalli32.8451.6690.38156forward
CNT30116414Brachypodium distachyonOryza nivara36.8462.585.71175forward
CNT30725707Brachypodium distachyonLupinus angustifolius67.3758.0880.31320forward

Expression of CNT30149228

Peptides detected in this lncRNA

>peptide 1 (53 aa)
RSYLGFHVFSRIELATFSSSAIKMLSKRMPSCIVQISIPIAPIGSNSGLSSSK*

Sequence

>CNT30149228
CAAGGTCATATTTGGGCTTCCATGTCTTCTCTAGGATAGAGTTGGCAACCTTCTCATCATCAGCAATCAAAATGTTGTCAAAAAGAATGCCATCTTGCAT
TGTCCAGATCTCAATCCCAATAGCTCCAATTGGATCAAACTCAGGCTTGTCTAGTTCAAAATAGTCAGGGTTGGGGATCTCTTGGGGCTTCCACACTCCT
TTGTAGTTGGGGTTGTCAATCAGAGGTGCTTGCCACTTGCCCTTGTAAGCAGGATTCTGTTTCATAGGCTTCTTCCACTCCCCACATCCAGGTGCCTCTT
CACACTTTGGGTTGTCCATCCTTGGTGCCTCCCATTCTCCATCTTCCTCATCATCCCAATCTTCAGGCTTGGCAGCTTCAGGGTCATCAATTTCTTCAGG
CTCATCGTCCAACCATCCTTCCGGCTTGGTGGCCTCCTCATCAACGATTTCCATTGGGGCATCCTCATCCCAGTC