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Detailed information on CNT30148624


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41048|PSBQ1_MAIZE, E-value = 7e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694735Brachypodium distachyonOryza sativa37.6219.9593.04158forward
CNT30671430Brachypodium distachyonSetaria viridis23.5739.2994.9599forward
CNT30520717Brachypodium distachyonSetaria italica41.6723.9788175forward
CNT30179895Brachypodium distachyonSecale cereale41.1965.0493.64173forward
CNT30290295Brachypodium distachyonTriticum aestivum97.3863.0286.8409forward
CNT30385644Brachypodium distachyonTriticum turgidum49.2926.595.17207forward
CNT30554363Brachypodium distachyonOryza glaberrima38.816.7993.25163forward
CNT30659718Brachypodium distachyonTriticum dicoccoides50.7131.3294.37213forward
CNT30453977Brachypodium distachyonSaccharum spontaneum48.5768.9287.75204forward
CNT304156Brachypodium distachyonZea mays47.6249.587200forward
CNT30680164Brachypodium distachyonTriticum urartu50.7132.7295.31213forward
CNT30351417Brachypodium distachyonEragrostis tef28.154.8890.68118forward
CNT30362913Brachypodium distachyonSorghum bicolor406085.71168forward
CNT30370617Brachypodium distachyonOryza glumipatula37.3857.0992.99157forward
CNT30581445Brachypodium distachyonEchinochloa crusgalli49.2929.9189.86207forward
CNT30496379Brachypodium distachyonDigitaria exilis36.6735.6591.56154forward
CNT30117138Brachypodium distachyonOryza nivara37.3813.0592.99157forward

Expression of CNT30148624

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTYGHCFLSMSGLRLRMSWADSLARAAAAAGGSGCR*

>peptide 2 (70 aa)
MVLEVVAQVGGPEAEVVHDVRPLLLVDERLEVEDVLGRLLGPGRRRRRRQRLQVEAVLQGEREVPRLVRVL

Sequence

>CNT30148624
TACTTAAGTGCTTGCTGACATATTATCAACAAAGAAGTTACATCGCCGGTTCCATATGAACAAACACAAAAGGCCTGAAACTGAAAGCACACGGCCATTA
TGCGGATCCATGCATCTATCCTAGCTTGGCGAGGACATCGCTAAGAACGGTCTTGGTCTCGCCGTAGTACTTCTCGGCTTCGGCGGGGCTCTTGATCTTG
GCTGCATGGTCCTTGAGGTCGTAGCGCAGGTAGGAGGCCCTGAGGCGGAGGTCGTTCATGACGTACGGCCATTGCTTCTTGTCGATGAGCGGCTTGAGGT
TGAGGATGTCCTGGGCCGACTCCTTGGCCCGGGCCGCCGCCGCCGCCGGAGGCAGCGGCTGCAGGTAGAAGCGGTTCTTCAGGGGGAGCGCGAAGTCCCT
CGCCTCGTCCGAGTTCTCCG