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Detailed information on CNT30148503


BLAST search results

BLAST vs Swiss-Prot:
sp|P35476|PLAS1_TOBAC, E-value = 5e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673857Brachypodium distachyonSetaria viridis44.7320.5685.71140forward
CNT30708891Brachypodium distachyonGlycine max20.4511.5389.0664forward
CNT30391539Brachypodium distachyonTriticum turgidum32.9137.8792.23103forward
CNT30587554Brachypodium distachyonMusa acuminata20.4513.1493.7564forward
CNT30443574Brachypodium distachyonAegilops tauschii59.7434.1291.44187forward
CNT30663028Brachypodium distachyonTriticum dicoccoides37.3824.8990.6117forward
CNT30141888Brachypodium distachyonLolium perenne53.9931.8392.9169forward
CNT3010819Brachypodium distachyonZea mays51.1242.987.5160forward
CNT30368525Brachypodium distachyonSorghum bicolor48.8825.9388.24153forward
CNT30620289Brachypodium distachyonCajanus cajan20.457.8585.9464forward
CNT30370409Brachypodium distachyonOryza glumipatula56.5522.7290.4177forward
CNT30102318Brachypodium distachyonOryza rufipogon60.0630.3289.89188forward
CNT30583031Brachypodium distachyonEchinochloa crusgalli58.7921.2586.41184forward
CNT30116921Brachypodium distachyonOryza nivara60.0628.1489.89188forward
CNT30557376Brachypodium distachyonPanicum hallii44.0946.3189.13138forward

Expression of CNT30148503

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MYIVCRRVHYNNTSSYIDTLETEKLRRAGRCINQLTP*

>peptide 2 (67 aa)
MHQSVDAVGARDSERDGESLAGGVEVLLLGDLGDVDAAGHGVLVEHDVVGEPGVVLERDRLPGLDAEL

Sequence

>CNT30148503
GCTCATCAATGATCCTGCATGTATATAGTTTGCAGGCGCGTACATTATAACAACACATCATCATATATTGACACCCTTGAAACGGAGAAATTAAGGCGGG
CCGGGCGATGCATCAATCAGTTGACGCCGTAGGTGCCAGGGACAGTGAGCGTGACGGAGAAAGTCTCGCCGGGGGCGTTGAGGTACTCCTCCTGGGAGAT
CTTGGAGACGTCGACGCCGCTGGGCACGGCGTCCTCGTCGAACACGATGTTGTGGGGGAACCCGGCGTTGTTCTTGAACGTGATCGTCTCCCCGGCCTTG
ACGCTGAACTCGT