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Detailed information on CNT30148068


BLAST search results

BLAST vs Swiss-Prot:
sp|P30302|PIP23_ARATH, E-value = 2e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30289517Brachypodium distachyonTriticum aestivum20.2121.1691.45117forward
CNT30221219Brachypodium distachyonHordeum vulgare24.1821.0285.71140forward
CNT30387764Brachypodium distachyonTriticum turgidum20.2113.1991.45117forward
CNT30569510Brachypodium distachyonActinidia chinensis11.0530.7793.7564forward
CNT30592144Brachypodium distachyonMusa acuminata16.2340.8790.4394forward
CNT30436090Brachypodium distachyonAegilops tauschii22.4512.4991.54130forward
CNT30659451Brachypodium distachyonTriticum dicoccoides20.2132.5991.45117forward
CNT30139319Brachypodium distachyonLolium perenne24.3512.0584.4141forward
CNT30232947Brachypodium distachyonAnanas comosus10.7126.1688.7162forward
CNT30218728Brachypodium distachyonKalanchoe fedtschenkoi11.2322.1187.6965forward
CNT30362596Brachypodium distachyonSorghum bicolor32.4731.8189.36188forward
CNT30595794Brachypodium distachyonOryza meridionalis10.7128.3191.9462forward
CNT30575194Brachypodium distachyonOryza barthii10.0228.2989.6658forward
CNT30116634Brachypodium distachyonOryza nivara17.9649.5288.46104forward
CNT30604398Brachypodium distachyonOryza punctata389.3188.64220forward
CNT30113851Brachypodium distachyonFicus carica17.6236.8289.22102forward

Expression of CNT30148068

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPPKAHAMPRIPTPPHAASGPDAETSVWCL*

>peptide 2 (41 aa)
KTTETTILQRQTLRKVVKALILSPGTGRRCFSSLLSLQIVT*

>peptide 3 (92 aa)
ENNRNDHIAAANSSKGGKGAYSLPRHWPPLLQLTTQLADCNLGVAPEGAQGLDGAGPEDVLVVEGRDRRADHWADPEDPLQSKDRCQIKASH*

Sequence

>CNT30148068
GAAAACAACAGAAACGACCATATTGCAGCGGCAAACTCTTCGAAAGGTGGTAAAGGCGCTTATTCTCTCCCCCGGCACTGGCCGCCGTTGCTTCAGCTCA
CTACTCAGCTTGCAGATTGTAACTTAGGCGTTGCTCCTGAAGGAGCCCAGGGCCTTGATGGCGCCGGCCCTGAGGATGTACTGGTGGTAGAAGGCCGCGA
TCGCCGCGCCGACCATTGGGCCGACCCAGAAGATCCACTGCAAAGCAAAGATCGATGTCAGATCAAGGCAAGTCATTAATTTATTTACAGATAAATTAAA
TGAGAATTGTCTTAATGTGTCTGGTCTGGTGTGAGTAAATAGATATATACCTGATCATCCCAGGGAGACTTTCCGGGCCAGGAAGAGCCCGAAGGTGACG
GCCGGGTTGATGTGTCCCCCAGAGATGCCCGCGGTGCAGTAGACGAGCACGAAGATCATGCCGCCGAAGGCCCACGCGATGCCGAGAATCCCCACGCCGC
CGCACGCCGCGTCGGGGCCGGACGCCGAGACGTCCGTCTGGTGCTTGTAGCCGATGACGGTGGCCACGGTGATGTAGAG