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Detailed information on CNT30147849


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Brachypodium distachyonOryza sativa51.4725.6293.39227forward
CNT30678417Brachypodium distachyonSetaria viridis37.6450.387.95166forward
CNT30522336Brachypodium distachyonSetaria italica25.8543.0288.6114forward
CNT30524833Brachypodium distachyonPhaseolus vulgaris23.586.8784.62104forward
CNT30296550Brachypodium distachyonTriticum aestivum23.8125.1294.29105forward
CNT30589135Brachypodium distachyonMusa acuminata28.1232.2988.71124forward
CNT30553208Brachypodium distachyonOryza glaberrima90.9344.3692.02401forward
CNT30439764Brachypodium distachyonAegilops tauschii41.0438.7693.37181forward
CNT30241770Brachypodium distachyonAvena sativa16.124.2395.7771forward
CNT30447830Brachypodium distachyonSaccharum spontaneum23.8118.3691.43105forward
CNT301613Brachypodium distachyonZea mays41.532.1188.52183forward
CNT3067156Brachypodium distachyonLeersia perrieri17.0127.889275forward
CNT30684393Brachypodium distachyonTriticum urartu70.0730.8492.88309forward
CNT30361799Brachypodium distachyonSorghum bicolor48.5322.4689.72214forward
CNT30596039Brachypodium distachyonOryza meridionalis2237.0293.8197forward
CNT30369879Brachypodium distachyonOryza glumipatula46.7128.6993.2206forward
CNT30100699Brachypodium distachyonOryza rufipogon41.516.6492.35183forward
CNT30575527Brachypodium distachyonOryza barthii24.9417.4392.73110forward
CNT30579178Brachypodium distachyonEchinochloa crusgalli22.458.0889.999forward
CNT30116295Brachypodium distachyonOryza nivara24.9411.6892.73110forward
CNT30603857Brachypodium distachyonOryza punctata36.7318.6290.74162forward

Expression of CNT30147849

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSGRMLKSVRLNSCTAAGTSAQRGMRSASSMARRSST*

Sequence

>CNT30147849
CTCTGTTTTTTTTCTTTTGACCTTTCTCTAGCTAATACCGGGCGAGCGCGCGGCGGAGCACCTGGGCGAGGAGGCTAGGGGCGCTGAGGTGCGGGAGGTG
GCCCTCCGTGGGCAGAGGCTCGATGGTGGTGCGGCCGCCGAGGTGCGCCTTGAGGTAGGCGGCGACGGAGGCCGGGACGGAGACGTCGCGCGTGGTCTGC
ACGACGACGCAGGGCGCCTGCACCATGCCGAGCACGCCGCGGAGGTCCGTCTTGAAGACGCTCTGGCAGACGTAGAGGGAGATGTCCGGCCGCATGTTGA
AGAGCGTCCGGCTGAACTCCTGCACCGCCGCGGGCACGTCGGCGCAGCGCGGGATGCGTAGCGCGTCGAGTATGGCGAGGAGGTCGTCCACGTAGGCGTC
GAGGTTATTGTAGCGGCGGAAGTCGAAGTGGTCCGGGTTCA