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Detailed information on CNT30147603


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39096|ERD15_ARATH, E-value = 6e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694940Brachypodium distachyonOryza sativa21.8122.3487.6965forward
CNT30672185Brachypodium distachyonSetaria viridis45.324.6882.96135forward
CNT30520486Brachypodium distachyonSetaria italica45.325.6782.96135forward
CNT30221871Brachypodium distachyonHordeum vulgare30.239.1388.8990forward
CNT30251998Brachypodium distachyonAvena sativa36.5837.8588.07109forward
CNT30659005Brachypodium distachyonTriticum dicoccoides36.5838.3888.07109forward
CNT30450016Brachypodium distachyonSaccharum spontaneum36.589.8687.16109forward
CNT30680544Brachypodium distachyonTriticum urartu36.5842.2588.07109forward
CNT30352666Brachypodium distachyonEragrostis tef36.5813.4786.24109forward
CNT30362862Brachypodium distachyonSorghum bicolor36.5821.587.16109forward
CNT30370761Brachypodium distachyonOryza glumipatula36.5810.9987.16109forward
CNT30100764Brachypodium distachyonOryza rufipogon29.1932.2289.6687forward
CNT30496353Brachypodium distachyonDigitaria exilis34.238.9287.25102forward

Expression of CNT30147603

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSSCSSSSTLASTRCSWGFCKAWLRNHAVELTSSHHCGE*

>peptide 2 (38 aa)
GSRGRARRCRRARLLLPWLPPGVPGGSARRGCGTMRWS*

>peptide 3 (97 aa)
GVEEERGDVVVLVFFYLGFHPVFLGVLQGVVAEPCGGVDEFPPLRRVVLHPPEGRRDEHRRVRVQPRLRHGRAAHPPNDDDRLCLLWVGKEEPKKGTS

>peptide 4 (41 aa)
MNIGASGFSPACAMAALLILPTTTIVSAFCGWERKNRRRGLR

Sequence

>CNT30147603
GGGGAGTAGAGGAAGAGCGCGGCGATGTCGTCGTGCTCGTCTTCTTCTACCTTGGCTTCCACCCGGTGTTCCTGGGGGTTCTGCAAGGCGTGGTTGCGGA
ACCATGCGGTGGAGTTGACGAGTTCCCACCACTGCGGCGAGTAGTCCTCCACCCGCCTGAAGGCCGCCGGGATGAACATCGGCGCGTCCGGGTTCAGCCC
CGCCTGCGCCATGGCCGCGCTGCTCATCCTCCCAACGACGACGATCGTCTCTGCCTTTTGTGGGTGGGAAAGGAAGAACCGAAGAAGGGGACTTCGGG