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Detailed information on CNT30146603


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378612Medicago truncatulaArabidopsis thaliana34.0441.6185.27129forward
CNT3021436Medicago truncatulaCitrullus lanatus32.1937.8983.61122forward
CNT30157163Medicago truncatulaPistacia vera49.8743.0584.13189forward
CNT30562763Medicago truncatulaActinidia chinensis44.8537.0484.12170forward
CNT30128751Medicago truncatulaCorymbia citriodora51.1938.1184.02194forward
CNT30362074Medicago truncatulaSorghum bicolor32.1921.6783.61122forward
CNT30355760Medicago truncatulaLactuca sativa25.8614.6783.6798forward
CNT30154533Medicago truncatulaPrunus persica32.9828.4791.2125forward
CNT30706321Medicago truncatulaPrunus avium32.9822.6490.4125forward
CNT3026328Medicago truncatulaPopulus trichocarpa99.4771.483.82377forward
CNT30113754Medicago truncatulaFicus carica34.5632.0385.5131forward

Expression of CNT30146603

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLEHNINSQRFPIWDKYPMVIFICSIVVFETLCKCL*

>peptide 2 (33 aa)
MHPNAGPLATTTRSGCTMIAFSFLRRSEYPTEL*

Sequence

>CNT30146603
GGCAATTTCAATTTTTGACAGTTAAACCATGAGTCCCCTGTCTCAGCAATCACAGCAGTTTCCCTCGACAACATCTGTTGTATATGTTGGAACATAACAT
TAACTCTCAAAGGTTTCCCATCTGGGACAAATATCCTATGGTAATTTTCATATGCAGCATTGTTGTGTTTGAGACGCTTTGCAAGTGCCTTTAGGAAATC
CTTCATCAAAATGCATCCAAATGCAGGTCCATTAGCAACCACAACCCGATCGGGCTGCACAATGATTGCCTTCTCTTTCTTGAGAAGAAGTGAATACCCA
ACAGAGCTGTAGTCATTAAAAATGGGACCGGCAAACAAGTATGCATCAGCAGATTCTACAATCTCAGCACAGAATGCCG