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Detailed information on CNT30144834


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677521Medicago truncatulaSetaria viridis32.3538.9985.5131forward
CNT30522056Medicago truncatulaSetaria italica23.219.3188.394forward
CNT30549847Medicago truncatulaIpomoea triloba34.5734.3183.57140forward
CNT30727441Medicago truncatulaCorchorus capsularis61.2341.0683.87248forward
CNT3094458Medicago truncatulaSolanum tuberosum68.8954.1782.44279forward
CNT30340692Medicago truncatulaEragrostis tef61.9869.5381.27251forward
CNT30483750Medicago truncatulaChara braunii44.250.1482.12179forward
CNT3048758Medicago truncatulaCucumis sativus74.5754.3285.43302forward

Expression of CNT30144834

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MFSGILCIGTCPGPSFITCRSAQSKQKEIMVSRNIFTVVNTSAH

>peptide 2 (58 aa)
RPRLEHVDVVWLNQQHEQQSCKLSLHPSHHLGLATRDVLLESRNREEQYQVHRYLQHQ*

>peptide 3 (57 aa)
MSSNLVSYHSILHIISVWQPEMFFWSHVTEKSSTKCTDICSTNSRGDVIVTRGNIGC*

Sequence

>CNT30144834
TCGTCCCAGGCTTGAGCATGTGGATGTTGTTTGGCTAAATCAGCAGCATGAGCAGCAATCTTGTAAGCTATCACTCCATCCTTCACATCATCTCGGTTTG
GCAACCCGAGATGTTCTTTTGGAGTCACGTAACAGAGAAGAGCAGTACCAAGTGCACCGATATTTGCAGCACCAATAGCAGAGGTGATGTGATCGTAACC
AGGGGCAATATCGGTTGTTAAAGGACCAAGAGTGTAGAAAGGTGCTTCATTACACCATTCTAGCTGTTTTTGCATGTTTTCAGGAATCTTGTGCATTGGA
ACATGTCCAGGTCCTTCATTCATCACCTGTAGATCAGCTCAAAGTAAACAAAAAGAAATCATGGTCTCCAGAAATATATTTACGGTAGTCAACACATCAG
CTCAT