Detailed information on CNT30141866


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84VG1|CHMP1_ORYSJ, E-value = 2e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Lolium perenneSetaria viridis37.3410092.07227forward
CNT30513024Lolium perenneJuglans regia64.6452.7583.46393forward
CNT30371693Lolium perenneArabidopsis thaliana18.5920.8181.42113forward
CNT30306600Lolium perenneTriticum aestivum32.7362.7885.93199forward
CNT3085000Lolium perenneVigna radiata88.1619.0881.16536forward
CNT30554195Lolium perenneOryza glaberrima89.817.9293.04546forward
CNT30254428Lolium perenneAvena sativa53.7860.8996.94327forward
CNT30669382Lolium perenneTriticum dicoccoides38.3239.0997.42233forward
CNT3060118Lolium perenneArabidopsis lyrata18.5938.4483.19113forward
CNT30347540Lolium perenneEragrostis tef95.7249.288.49582forward
CNT30368840Lolium perenneSorghum bicolor33.8857.3896.12206forward
CNT30370517Lolium perenneOryza glumipatula35.8643.6995.41218forward
CNT30571602Lolium perenneVitis vinifera72.8640.1682.17443forward
CNT30705067Lolium perennePrunus avium35.5322.1583.33216forward
CNT30644153Lolium perenneCannabis sativa24.3421.1480.41148forward
CNT30116955Lolium perenneOryza nivara89.869.293.41546forward
CNT30111719Lolium perenneFicus carica36.3524.4587.33221forward

Expression of CNT30141866

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MRLLTSVSGVESEVDPAMAPSMNSAWTSMLTNWRSKLSMVSDIFWRLPVAREESRDLTMLPMDFPMACILACVSRRDARRR*

>peptide 2 (53 aa)
AGEVVLVDLLLILCGGYGVRGGLRQADGDLEAVVVGDLLHEAVDLGLWRGERG*

>peptide 3 (66 aa)
MRAPSTLPFSMAFLTLSFCSFSSFSHLRACRCSDLEVNLRSKICAISFSGLPIAGRRRFGWGRSGLG

>peptide 4 (32 aa)
RVRSSSSTFSLSFAAGMACAAACGRPTETSRP*

>peptide 5 (33 aa)
MRGAGSSCARCACGWRSRRRCARRRRCPSRWPS*

Sequence

>CNT30141866
GGCGGGTGAGGTCGTCCTCGTCGACCTTCTCCTTATCCTTTGCGGCGGGTATGGCGTGCGCGGCGGCCTGCGGCAGGCCGACGGAGACCTCGAGGCCGTA
GTCGTCGGCGACCTGCTGCATGAGGCTGTTGACCTCGGTCTCTGGCGTGGAGAGCGAGGTTGACCCGGCCATGGCGCCCTCCATGAACTCGGCCTGGACC
TCCATGTTGACGAACTGGCGCTCGAAGCTGTCCATGGTCTCGGACATCTTCTGGAGGTTGCCGGTGGCGAGGGAGGAGTCGAGGGACTTGACGATGTTGC
CCATGGACTTTCCGATGGCCTGCATCTTGGCCTGCGTGTCGAGGCGGGATGCGAGGCGCAGGTAGTTCATGTGCTCGGTGCGCTTGCGGATGGCGTTCTC
GGCGTAGATGCGCGCGCCGTCGACGTTGCCCTTCTCGATGGCCTTCTTGACCTTGAGCTTCTGCTCCTTCTCCTCCTTCTCGCACTTGCGCGCCTGCCGC
TGCAGCGACTTGGAGGTGAACTTGAGGTCGAAGATCTGCGCCATCAGCTTCTCCGGGTTGCCCATCGCCGGTCGCCGGAGGTTTGGGTGGGGGAGATCGG
GATTGGGG