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Detailed information on CNT30141231


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84PD8|SAP11_ORYSJ, E-value = 5e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672179Lolium perenneSetaria viridis17.2552.6887.01177forward
CNT30523258Lolium perenneSetaria italica20.7619.0787.79213forward
CNT30533125Lolium perenneEucalyptus grandis10.2320.1982.86105forward
CNT30444092Lolium perenneAegilops tauschii21.2526.9590.83218forward
CNT30255362Lolium perenneAvena sativa21.3519.0193.61219forward
CNT3067877Lolium perenneLeersia perrieri20.7620.1587.79213forward
CNT30102874Lolium perenneOryza rufipogon20.7624.2689.67213forward
CNT30117496Lolium perenneOryza nivara20.7623.0389.67213forward

Expression of CNT30141231

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MTGTAGTWRRLLVAGLAGKPQLLAQSAMSGACRCTSVGSSTLLSRCAMTPVVYEVKDDPLARPWSTRS*

>peptide 2 (32 aa)
MSSLSFDLQNLTILAARTTGFSLAMASLAADL*

>peptide 3 (57 aa)
MGQHHTPTLSSSSPPPRAGSQPPLQQPQGYHRTVLSFVAPAPITIFHLFSPFRFHSR*

Sequence

>CNT30141231
ACTGCAGAGAAATGACACCACCCAAGCGATCGATTGATGATAATTTATACAAATATATAGGGAAATTGAATTTTTAAATAGAGAGATCATGGGACAACAC
CACACACCCACCCTATCTTCCTCATCTCCTCCGCCGCGAGCCGGCAGCCAACCACCACTACAACAACCACAAGGTTATCATCGCACTGTTTTGTCCTTCG
TCGCGCCCGCCCCTATCACCATCTTCCACCTTTTCTCTCCTTTCCGTTTTCATTCACGGTAACACCTAGGTGGCTCGCCTTTAATTTTCCAAAGGAAGGA
AAGAAAGAGGAAAAAAGAGTGGATTTTTCTTGAGATTTCTTCTCCGTGTGTGTGTATATCATCATGTCCTCCTTGTCCTTTGATCTTCAGAACCTAACGA
TCTTGGCCGCGCGCACGACGGGGTTCTCCTTGGCGATGGCGTCCCTGGCGGCGGACTTGTAGTCGAAGCTGCAGTCGTGGCGGTCCGAGTAGCGGTGGGA
GCCGCAGAACATCTCGCCGCAGCGGCAGCGGAAGCCCGTGAGGCCGACGCGCTTCCGGCAGCTGTGGCAGCGGTTGACCGACGACGACCTGGACGCCTTC
GGGTCGGCGGGGCCGGCGGCCGGCCGGTCGACGGCCACGTACACGGGCTGCGCCGATGCGGCGGGCGCCCTAGGCTTGTCGAAGAGGGTCGGGAACGGCG
CCGGCTGCGAGGAGGAGGATGACGGGGACGGCGGGGACGTGGAGGAGGTTGTTGGTGGCGGGGTTGGCCGGGAAGCCGCAGCTGTTGGCGCAGAGCGCGA
TGTCCGGCGCGTGCAGGTGCACCTCCGTCGGCTCCTCCACCTTGTTGTCCCGCTGCGCCATGACGCCTGTAGTATACGAGGTCAAAGACGATCCCCTCGC
GCGCCCTTGGTCGACACGGAGCTAGCTTTGATCCGGGGGCGAGGAGGCCGGCCTGGCGCTGGCGGGGCAAGGAATGGGATTGGAGATGGAGGCTGGGTGG
CTTTGGGGGGGAGGAAATGGGTTGGA