Detailed information on CNT30140847


BLAST search results

BLAST vs Swiss-Prot:
sp|P29195|CAPP1_SORBI, E-value = 8e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673967Lolium perenneSetaria viridis43.6845.6986.75249forward
CNT30521394Lolium perenneSetaria italica43.686.986.75249forward
CNT30193220Lolium perenneSecale cereale46.6730.0292.48266forward
CNT30474298Lolium perenneSaccharum spontaneum43.3331.9187.04247forward
CNT3016288Lolium perenneZea mays36.3240.0487.44207forward
CNT30368405Lolium perenneSorghum bicolor36.3216.2988.89207forward
CNT30369646Lolium perenneOryza glumipatula45.7949.0681.23261forward
CNT30148536Lolium perenneBrachypodium distachyon15.6141.5994.3889forward
CNT30583436Lolium perenneEchinochloa crusgalli43.6827.385.54249forward
CNT30497176Lolium perenneDigitaria exilis44.2125.0786.11252forward
CNT30115905Lolium perenneOryza nivara45.7948.7981.99261forward
CNT30557292Lolium perennePanicum hallii44.0432.1884.46251forward

Expression of CNT30140847

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MPAAMPFMVRMSVSSSPGAYSLAAFSFTSEACWFSSTNSLDSGRCAVTWKLGSLIRFSVNAWQTFRIVM*

>peptide 2 (51 aa)
MASNSYETNVFSGPQLFVRHIYTLIEQLRSSTSHLHQAGEHYFDIVISYKF*

Sequence

>CNT30140847
TGGTATGGTGTTCACCGCACATATAGATTGCTGCACAAAAAAGCAAGTGGCTTACACTGATGGCAAGTAATAGTTACGAGACAAATGTCTTTAGTGGCCC
GCAATTGTTTGTTCGACATATTTATACACTGATTGAACAGCTGAGAAGTTCCACTTCACATTTACATCAAGCAGGCGAACATTATTTCGACATTGTAATT
TCTTATAAATTCTGAATTCCAGTATAGGCAGTCTGAAGATTTACACACAACAAAACCGGCGCAGTCTGAAATCTAACCCGTGTTTTGCATGCCGGCCGCG
ATGCCCTTCATGGTGAGGATGAGCGTGTCCTCCAGTCCCGGCGCGTACTCGCTCGCCGCGTTCAGCTTCACCAGCGAAGCCTGCTGGTTCTCGTCGACGA
ACTCCTTGGACAGCGGCCGCTGCGCCGTCACCTGGAAGCTGGGGTCCCTGATCCGCTTCAGCGTGAATGCCTGGCAGACGTTCAGGATCGTGATGTAAGG
GTCGCGCAGCCTCAGCCGCTGCTTCAGGTACGGGTGCTCCTCCCCGAACGAGTGCTCGATCACCTCGCCC