CANTATAdb - search

Detailed information on CNT30140546

BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 7e-51

BLAST vs NONCODE:
NONGMAT000508, E-value = 6e-38

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30375418	Lolium perenne	Arabidopsis thaliana	9.86	33.9	87.5	80	forward

Expression of CNT30140546

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MSPEMRLTPPRRARRRMAGLVMPWMLSRSTFRWRLAPPLPSPLPPLPRPDISDEFSLFSGEFDSCVVGVAGRMRWMVV

Sequence

>CNT30140546
TGGTCGGCTTACACAAAAAAGATTGAATCGAAACACTGAAACCCAACACGATTGATTTGGGGGACAGTAAATACAGAGCCAGAGAACCAGTAATTGCATG
CCAGATTGCTGAGCCATCACACTCATATGGACAGATCTAAGATATTTCAGAAGAAAAGGGTGAAGCACAGAAGATTGTAGCCGAATCGAAACACTGAAGG
CAAACATTTTGCATACTCATATGAACAGATCTAAGAGATTGCAGTAGAGGGTGAACTAGGTAAATTTTCGTTCCATTCTACTACCAACCAACAGTCTTAC
AGTCAACCCAGAGCACACGACAGCGAGATACTGCACCGACTACTCGACAACAGGCCATGAACCCTAAACAGAGGCTAGCTTTCTAAATCTGACCCAGCGA
CGGACCCTGCCCTTCCTAGCCGCCGAAGCCATAGAGCGTGCGTCCCTGGCGCTTGAGCGCGTACACGACGTCCATGGCGGTGACGGTCTTGCGCCTGGCG
TGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCATAGATGAGCCCCGAGATGCGCTTGACGC
CGCCGCGGCGCGCCAGGCGGCGGATGGCCGGCTTGGTGATGCCCTGGATGTTGTCCCGCAGCACCTTCCGGTGGCGCTTGGCGCCGCCCTTGCCGAGCCC
CTTGCCTCCCTTGCCGCGGCCCGACATCTCCGACGAGTTTTCCCTTTTCTCCGGTGAGTTTGACTCGTGTGTGGTGGGCGTTGCTGGTAGGATGAGGTGG
ATGGTTGTGGA