Detailed information on CNT30137478


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678336Lolium perenneSetaria viridis64.5761.1983.54164reverse complement
CNT30522442Lolium perenneSetaria italica25.597.9893.8565reverse complement
CNT30188078Lolium perenneSecale cereale25.596.7195.3865reverse complement
CNT30298665Lolium perenneTriticum aestivum65.3525.6688.55166reverse complement
CNT30393886Lolium perenneTriticum turgidum42.9129.1489.91109reverse complement
CNT30664241Lolium perenneTriticum dicoccoides82.2835.4887.56209reverse complement
CNT309319Lolium perenneZea mays64.5730.0483.54164reverse complement
CNT30684883Lolium perenneTriticum urartu82.2834.7288.04209reverse complement
CNT30349302Lolium perenneEragrostis tef44.4920.3686.73113reverse complement
CNT30148341Lolium perenneBrachypodium distachyon67.7258.788.37172reverse complement
CNT30579037Lolium perenneEchinochloa crusgalli64.5717.3583.54164reverse complement

Expression of CNT30137478

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MGEIIIDVELASKIIPGGSSGQSLLTASGSMATSSSTTPTSATN*

>peptide 2 (53 aa)
HRRQRLEEARHGGDHHRRRARIQDHPRWFIWPVAAYREWINGDLIIDDANIGY*

>peptide 3 (63 aa)
SSPSAARRSTPWGRSSSTSSSHPRSSPVVHLASRCLPRVDQWRPHHRRRQHRLLISGRACMVG*

Sequence

>CNT30137478
CTCATCGCCGTCAGCGGCTAGAAGAAGCACGCCATGGGGGAGATCATCATCGACGTCGAGCTCGCATCCAAGATCATCCCCGGTGGTTCATCTGGCCAGT
CGCTGCTTACCGCGAGTGGATCAATGGCGACCTCATCATCGACGACGCCAACATCGGCTACTAATTAGCGGCCGTGCATGCATGGTTGGCTAGTCGGTCA
CAATTCAGATGGGCAGAGAAGGACTGGTGTCTCTGTGGGTTTGGTGTTGGAGCT