Detailed information on CNT30137123


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6PL11|SKP1_ORYSJ, E-value = 3e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671215Lolium perenneSetaria viridis12.5527.9898.5368forward
CNT30403855Lolium perenneBeta vulgaris14.5821.786.0879forward
CNT30303844Lolium perenneTriticum aestivum13.128.7410071forward
CNT309022Lolium perenneZea mays10.5226.2789.4757forward

Expression of CNT30137123

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTTEPTIDKIDRFSCRHKQPLRMFTNPTSTLRYY*

>peptide 2 (39 aa)
MLKVLRISSGVLRISSGVLPLIMSATVWQVRSSRPLMLR*

>peptide 3 (94 aa)
MRQCADLLEGPLVLPADLLLLLCGEVVLDVEGLADLLGGLADLLGGLALDHVGDGLAGEVEQALDVEVVGGEDEVEEGGLVDLDELGVPVLEVLG

Sequence

>CNT30137123
CAACGTTAGATAACAGTTGACGATACATATAAACAGGTTGTGCACAAGCGATGACCACTGAACAAACGATAGATAGCAGTTGACGATATATAAACTAGGT
TGTGCACAAGCGATGACAACAGAACCAACGATTGATAAGATAGATAGGTTTTCTTGCAGACATAAGCAACCACTGAGGATGTTCACGAACCCGACCTCGA
CTCTAAGATACTACTAATTACGACATTAATTAAAAGTAGCGTTGAAACGACGAGCAAATGCGGCAGTGTGCAGATTTACTCGAAGGCCCACTGGTTCTCC
CTGCGGATCTCCTCCTCCTCCTCTGCGGTGAAGTCGTTCTTGATGTTGAAGGTCTTGCGGATCTCCTCGGGGGTCTTGCGGATCTCCTCGGGGGTCTTGC
CCTTGATCATGTCGGCGACGGTCTGGCAGGTGAGGTCGAGCAGGCCCTTGATGTTGAGGTAGTTGGCGGCGAGGATGAGGTCGAAGAGGGTGGCCTGGTC
GACCTTGACGAACTCGGCGTCCCAGTTCTTGAGGTCCTCGGC