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Detailed information on CNT30136307


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43216|H2B5_WHEAT, E-value = 9e-59

BLAST vs NONCODE:
NONGMAT000269, E-value = 2e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3072234Lolium perenneQuercus suber29.828.180.79177forward
CNT30381273Lolium perenneManihot esculenta22.0536.6983.21131forward
CNT30196132Lolium perennePisum sativum28.6235.8683.53170forward
CNT30163367Lolium perennePistacia vera44.7831.9378.57266forward
CNT30179138Lolium perenneSecale cereale48.3235.5695.12287forward
CNT30283395Lolium perenneTriticum aestivum47.3128.7695.73281forward
CNT30434666Lolium perenneAegilops tauschii48.8239.5195.52290forward
CNT30656221Lolium perenneTriticum dicoccoides47.3132.0895.37281forward
CNT3015998Lolium perenneZea mays28.6244.0492.94170forward
CNT30205622Lolium perenneHelianthus annuus10.4422.9688.7162forward
CNT30719869Lolium perenneTriticum spelta47.3149.2195.73281forward
CNT30619778Lolium perenneCajanus cajan20.218.1388.33120forward
CNT30360466Lolium perenneLactuca sativa20.7129.2284.55123forward
CNT30174435Lolium perenneVigna angularis44.9539.8580.52267forward

Expression of CNT30136307

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSRSKRNSDSVTYTTIFLKLKPTKALAQVQLVTRIYRISTQRLTRHETATLLFLQIEII*

>peptide 2 (49 aa)
MVGFLLYLASLADSPASFSKMSLMKEFMMDMALEEMPMSGCTCLSTLKM*

>peptide 3 (97 aa)
MNSLRGSELGDGLGALRDGVLGELAGEDEADGSLDLPGRDGGLLVVPRKLGRLPGKLFEDVVDEGVHDGHGLGGDADVGVHLLEHLEDVDLVRLHGLL

Sequence

>CNT30136307
TAGCATGTAGTACTAGATGTCTAGATCGAAGAGAAACAGTGATTCGGTAACATATACAACTATCTTCTTAAAATTAAAACCGACCAAAGCACTCGCACAA
GTTCAACTCGTAACAAGAATTTACCGTATCTCCACACAAAGATTGACAAGACATGAAACAGCAACATTACTATTTCTTCAGATTGAAATAATCTAACAGA
ACTGTTTCACCGAGCAGCAGACCTTACATTAACCGAGACAGTTAACTAGAGGTTACAGCTAAATCTTGGAACTAGCAGGAAACCATCTAGGAGGAACACA
TGAACAGTCTACGAGGAAGTGAACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAAGTCT
GGATCTCCCGGGACGTGATGGTGGGCTTCTTGTTGTACCTCGCAAGCTTGGCCGACTCCCCGGCAAGCTTTTCGAAGATGTCGTTGATGAAGGAGTTCAT
GATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTACGTCTCCACGGACTTCTTG