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Detailed information on CNT30129800


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1S9I9|H2B1_MEDTR, E-value = 1e-55

BLAST vs NONCODE:
NONGMAT000269, E-value = 2e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Corymbia citriodoraOryza sativa24.631.2888.38198forward
CNT30675682Corymbia citriodoraSetaria viridis24.643.7187.88198forward
CNT30523142Corymbia citriodoraSetaria italica31.9349.4287.55257forward
CNT30315505Corymbia citriodoraCorylus avellana24.9743.9890.55201forward
CNT30518203Corymbia citriodoraJuglans regia44.640.2988.3359forward
CNT30702570Corymbia citriodoraQuercus lobata33.0453.288.72266forward
CNT30618876Corymbia citriodoraSesamum indicum46.5823.0684.53375forward
CNT3072234Corymbia citriodoraQuercus suber21.8627.9485.23176forward
CNT30379403Corymbia citriodoraManihot esculenta27.4539.3284.16221forward
CNT30526608Corymbia citriodoraPhaseolus vulgaris48.247.9682.22388forward
CNT30632073Corymbia citriodoraVigna unguiculata34.9137.3785.05281forward
CNT30200173Corymbia citriodoraPisum sativum49.696783.25400forward
CNT30163367Corymbia citriodoraPistacia vera50.0648.3879.16403forward
CNT3094085Corymbia citriodoraSolanum tuberosum22.9836.6383.24185forward
CNT30179138Corymbia citriodoraSecale cereale35.935.8189.97289forward
CNT30301816Corymbia citriodoraTriticum aestivum48.5756.2689391forward
CNT30220727Corymbia citriodoraHordeum vulgare34.5335.6489.93278forward
CNT30395424Corymbia citriodoraTriticum turgidum34.5357.889.57278forward
CNT30565715Corymbia citriodoraActinidia chinensis37.5238.4791.06302forward
CNT30586986Corymbia citriodoraMusa acuminata32.5574.0189.69262forward
CNT3086649Corymbia citriodoraVigna radiata34.1636.8685.82275forward
CNT30510004Corymbia citriodoraSolanum lycopersicum16.1542.6283.85130forward
CNT30552027Corymbia citriodoraOryza glaberrima34.2951.2189.13276forward
CNT30171046Corymbia citriodoraTrifolium pratense37.1484.2384.28299forward
CNT30435700Corymbia citriodoraAegilops tauschii48.4554.8588.72390forward
CNT30244799Corymbia citriodoraAvena sativa35.7840.1188.54288forward
CNT30660053Corymbia citriodoraTriticum dicoccoides37.0244.9588.93298forward
CNT30597299Corymbia citriodoraFraxinus excelsior27.8340.884.82224forward
CNT30457287Corymbia citriodoraSaccharum spontaneum37.7636.4588.49304forward
CNT30130711Corymbia citriodoraLolium perenne34.0440.2988.32274forward
CNT303693Corymbia citriodoraZea mays16.438.2693.94132forward
CNT30606042Corymbia citriodoraGossypium raimondii25.5967.5487.38206forward
CNT30231835Corymbia citriodoraAnanas comosus16.2720.1593.89131forward
CNT3066775Corymbia citriodoraLeersia perrieri14.9131.2592.5120forward
CNT30205622Corymbia citriodoraHelianthus annuus15.1645.1986.89122forward
CNT30683451Corymbia citriodoraTriticum urartu47.0851.9289.45379forward
CNT30722585Corymbia citriodoraTriticum spelta35.7839.2990.62288forward
CNT30346527Corymbia citriodoraEragrostis tef21.9983.8988.14177forward
CNT30363575Corymbia citriodoraSorghum bicolor37.7632.9787.5304forward
CNT30596761Corymbia citriodoraOryza meridionalis24.625.0686.87198forward
CNT30360275Corymbia citriodoraLactuca sativa34.9162.8685.05281forward
CNT30369169Corymbia citriodoraOryza glumipatula34.1647.9988.73275forward
CNT30154529Corymbia citriodoraPrunus persica17.7660.5986.71143forward
CNT30570929Corymbia citriodoraVitis vinifera46.0955.2984.1371forward
CNT3052765Corymbia citriodoraAmborella trichopoda2031.6990.06161forward
CNT3024557Corymbia citriodoraPopulus trichocarpa29.8146.3381.25240forward
CNT30327286Corymbia citriodoraAsparagus officinalis34.9131.0892.17281forward
CNT30103076Corymbia citriodoraOryza rufipogon22.6130.1886.81182forward
CNT30574682Corymbia citriodoraOryza barthii22.2426.1788.27179forward
CNT30496069Corymbia citriodoraDigitaria exilis34.5334.8486.69278forward
CNT30174435Corymbia citriodoraVigna angularis44.2253.1383.15356forward
CNT30557628Corymbia citriodoraPanicum hallii21.4931.0686.71173forward
CNT3065708Corymbia citriodoraSelaginella moellendorffii15.936.8989.84128forward
CNT30114697Corymbia citriodoraEutrema salsugineum46.4661.0183.42374forward

Expression of CNT30129800

Peptides detected in this lncRNA

>peptide 1 (29 aa)
STRENSKLGSLNPTITVLSNNYRSNCREN*

>peptide 2 (49 aa)
MVGFLLYLARREDSWASFSKMSLMKLFMMPMALLEMPMSGWTCFITLKM*

Sequence

>CNT30129800
TTCAACGCGTGAGAATTCGAAGCTTGGAAGTTTGAACCCGACAATCACAGTACTAAGCAACAACTATAGATCAAATTGCAGGGAGAATTAGTGAAACATA
GACTTCATTCAAAAGTAAACACATCATTGCTTCAATGAATTCACTTCTCTACATCCCACGAGTCAGTGACCCACTACCACTAACAACCATCACTTATCAG
AAGACAACATAGACCCCTCCTTAAGAAAACCTAAAAAATTTCCTCGTATCTGTTACAACAACACAGACGCTCTAGGAGCTGGTGAATTTGGTCACGGCCT
TGGTCCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACAAGCCGGACAGCGGTCTGGATCTCCCGGGAGGAGCTGGTGAATTTGGTCACGGC
CTTGGTCCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACAAGCCGGACAGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTG
TACCTGGCGAGGCGAGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGATGCCCATGGCCTTGCTGGAGATGCCGATGTCCG
GGTGGACCTGCTTCATCACCTTGAAGATGTAGATCTTGTACGTCTCCACGCTCTTCTTGGACCTCTTCTTCTTCTTGTCGCCGGCGGCGGCGCCGGACTC
CTTGGGGAGCTTCTTGCCGGCCTTGGGCTTCTTCTCCGCCGGGCCCTTCTCCGCCACCGCCGACTTCTTCTCCTCCGCCGGCTTCTCGGAGGCCGGCTTC
TTCTC