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Detailed information on CNT3012953


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30288228Zea maysTriticum aestivum8.1421.989.8669forward
CNT30221315Zea maysHordeum vulgare22.8816.5583.51194forward

Expression of CNT3012953

Peptides detected in this lncRNA

>peptide 1 (30 aa)
CQTFGRLGHKNTLSFDVSVAARLYILASLD*

>peptide 2 (88 aa)
MRVSAFLSTLLLKLPQRPRSPVRTTRATFLTGRVRVRGRSMEHRTRRPERGGERRRAVERWEHDMAAGPRRAGSGGSGRDKGRDGMGAR

Sequence

>CNT3012953
CGTGCCAAACATTTGGAAGACTTGGGCATAAAAATACACTGAGCTTCGACGTCTCAGTTGCGGCAAGATTATACATTTTGGCATCTCTGGATTGAAATTC
TTGTGTGTCGCAAGGAACACAGAACTCCGTTGCGTTTGTGCTATTATCAGGAATTACAGGCAGAGTGGAGAAAATGAGGAAAAAGAATTATATATAGCAG
GAGCACCGCACCACCAAGGGGACTCAGGCTCAGCCAGCGAGGGCGTCGGCACCGGCGACGATCTCGAGGATCTCCCCGGTGATCTTGGCCTGGCGCTGTC
GGTTGTAGGCGATGGAGAGGTTCTTGCGGAGCTCGATGGCGTTGTCGGTGCGCACCAGCGACACGAACTTGGAGTAGAGCAGCTCCACCTTGTCCACCTC
CTCGGAGACGAAGAGCGAGTAGACGAGGTCGCAGATGGCCTGCGAGTCCTTGACGGTGGGCACGCTGCTCACCTCTAGATCGCGCTCCAACGGGATGTAG
GGGCGGCGCTGGAAGTAGGCGTTGCCCTTCTTCCCCACGCTGACGACGGTGTACTGGAGGCCCAGCTGCTTGAGCTCATCGATGCGGGTTTCCGCCTTCT
TGAGCACGTTGTTGTTGAAGCTCCCGCAGAGGCCGCGCTCGCCGGTCAGGACCACGAGGGCCACCTTCTTGACGGGGCGGGTGCGGGTGAGGGGCAGGTC
GATGGAACACCGCACCAGGAGACCCGAGCGCGGGGGGGAGCGCCGTCGGGCGGTGGAGAGGTGGGAGCACGACATGGCTGCTGGTCCGCGGCGCGCGGGG
TCGGGGGGAAGCGGAAGAGACAAGGGGCGGGACGGGATGGGAGCGAGG