Detailed information on CNT30118070


BLAST search results

BLAST vs Swiss-Prot:
sp|P36886|PSAK_HORVU, E-value = 1e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694964Oryza nivaraOryza sativa88.1976.0895.54493forward
CNT30672228Oryza nivaraSetaria viridis14.3124.549080forward
CNT30520562Oryza nivaraSetaria italica20.3925.4592.11114forward
CNT30289849Oryza nivaraTriticum aestivum17.3523.7793.8197forward
CNT30436322Oryza nivaraAegilops tauschii15.9221.0494.3889forward
CNT30242614Oryza nivaraAvena sativa18.0728.2994.06101forward
CNT30659915Oryza nivaraTriticum dicoccoides17.532793.8898forward
CNT30681490Oryza nivaraTriticum urartu11.9931.3191.0467forward
CNT30339854Oryza nivaraEragrostis tef14.6722.2889.0282reverse complement
CNT30102685Oryza nivaraOryza rufipogon40.6143.1695.59227forward
CNT30581501Oryza nivaraEchinochloa crusgalli20.0425.2392.86112forward

Expression of CNT30118070

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIISITQTLMHRLHIGVLIRVTSLINLISR*

>peptide 2 (78 aa)
MIWSRTPMFLRPRTTPTPMMWPTAPESRASSFSPAVDFLFADGASPNLPANSISVVVVTMICIAPPNNLPIALHSHQA*

Sequence

>CNT30118070
GATCCAACAACAAAGCTCTGCATCAAGAAACATTCCATTGGTTGACAGAAACAAAATTTAGCTAGATAAGCACTGATTCCACGCACAATTTACATGATCA
TTTCCATCACACAGACACTCATGCATCGATTACACATAGGAGTATTGATTCGTGTGACTAGCTTAATTAATTTAATTAGCCGATGATCTGGTCCAGGACG
CCGATGTTCTTGAGGCCGAGGACGACGCCGACGCCCATGATGTGGCCGACGGCGCCGGAGTCGCGCGCCTCCAGCTTCAGCCCCGCCGTCGACTTCCTGT
TCGCCGACGGCGCCAGCCCGAACCTCCCCGCGAACAGCATCAGCGTCGTCGTCGTCACCATGATCTGCATCGCCCCCCCAAATAATTTACCCATCGCATT
ACATTCACATCAAGCCTAATCACGTCGTTGAATTCAGCTAATTAACCACACAGATAAATTAATTCAGTGTGTGTGTTCTTACCACGTTGGTGGCTGAGCC
GATGTAGTCGCACCGGATGCCCTGGGACCTCTTCTTGCTCATCCTCAACGATGGCAGCG