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Detailed information on CNT30118060


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004656, E-value = 1e-139

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577544Oryza nivaraOryza barthii24.4740.8487.4127forward

Expression of CNT30118060

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIYAVARRSCSYDGNCEQDRPSNSFFSLMNM*

>peptide 2 (38 aa)
MINDSNLNEDRHIAIPGWLSECAQVCNLHIIGCIWLIT*

>peptide 3 (33 aa)
MTQISMKIGILLFQVGYLNVRRFAICISLDVYG*

Sequence

>CNT30118060
GATCAGTTCGTGCTACTTTTGTTTGCAGTTAGTGGAACTGAGTTTGGTTCTTCCTATTCAGATACATTGTTTCCTGCATGATCAATGACTCAAATCTCAA
TGAAGATAGGCATATTGCTATTCCAGGTTGGTTATCTGAATGTGCGCAGGTTTGCAATTTGCATATCATTGGATGTATATGGTTGATAACTTGATATGGG
AGTAATTGGGAAATCTGTGATAAGTGAAAGATCGGAGGTATGTTTTGCCACGGTGGATGAACAGAAAGCCCGGTGAGGATGGCAAACATGGAGTGAAGAG
GGTATGATATATGCTGTGGCCAGAAGAAGTTGCTCATATGATGGAAATTGTGAGCAAGACAGGCCCTCGAATTCTTTTTTTTCCCTGATGAATATGTAAT
TTGGATATGCTGTTGGAATCGGTTGAAATTTATTTGTAACTCCACTTTCTCATTTCCCCATCATATATGTATGCATTGCTAAAAGTGATGTGAAGAGGGG
AATAGATAGCGTGTAGCCT