Detailed information on CNT30118053


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QXJ4|GL121_ORYSJ, E-value = 1e-113

BLAST vs NONCODE:
NONORUT002037, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019818Oryza nivaraCitrullus lanatus15.0825.6884.2176forward
CNT30599980Oryza nivaraFraxinus excelsior16.8730.4783.5385forward
CNT307812Oryza nivaraZea mays54.9632.779.78277forward

Expression of CNT30118053

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MEMPRVLRPASFITLINVTLDPALLLVVSIGLSRLAARKKSSTFTSLASLQGNPLTRTTVKNI

>peptide 2 (53 aa)
MRVWWVLPFRSIVDPCHGDAKGVETCEFHHVDQCNIGSSLALGCVHRLVEVSC*

>peptide 3 (33 aa)
MRPCGNTKTSPLLSVLVNSLFSLFAWFDVTKPT*

>peptide 4 (32 aa)
EIGGFDPNTALAMVIAPGFWLLSAAMATAGLS*

Sequence

>CNT30118053
CCGAGATTGGTGGATTTGATCCAAATACTGCATTAGCAATGGTAATCGCTCCAGGATTCTGGCTGCTAAGTGCAGCGATGGCAACTGCTGGCTTATCATA
GCTTGGATTGAACTGGAAGTGAATGAGACCTTGTGGGAACACGAAGACATCACCCTTGTTAAGTGTCTTGGTGAATAGCTTGTTTTCTCTGTTTGCTTGG
TTCGATGTAACAAAACCAACATAGAGTGTACCCTCAAAAACCGTTAGGATCTCGGTAGCACGGGGATGCGTGTGTGGTGGGTTTTGCCCTTTAGGAGCAT
AGTCGATCCTTGCCATGGAGATGCCAAGGGTGTTGAGACCTGCGAGTTTCATCACGTTGATCAATGTAACATTGGATCCAGCCTTGCTCTTGGTTGTGTC
CATCGGCTTGTCGAGGTTAGCTGCTAGGAAGAAGTCATCAACATTCACATCCTTAGCATCCTTGCAAGGGAACCCATTGACACGTACTACAGTGAAGAAC
ATAC