Detailed information on CNT30117896


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 2e-19

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522101Oryza nivaraSetaria italica60.5448.4991.25514forward
CNT30362155Oryza nivaraSorghum bicolor60.5447.1190.47514forward

Expression of CNT30117896

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 2 (57 aa)
RQTTHLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

>peptide 3 (58 aa)
MASLSSKTATSVCSRREWVERTLLYGSRSTKTARGTCFPAPVSLKKVLKASSPPPTVLS

>peptide 4 (63 aa)
MKWILGLGAQCRGSGGRCHRWPHCRARQRHRCAQGGSGWRGHCCMAQDRRRQHGGHASQHQSH*

>peptide 5 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30117896
CGACAAACCACTCACTTGGATATTAAAGATGCCACAAAGAAGGTTCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATC
GAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGATAGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGC
ACCAGGCAAGAACCCTGAACCTCTCTAGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTC
TGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGC
GCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTC
GCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCG
TAGGAGGAAAGCATGAAGTGGATCCTCGGGTTGGGCGCTCAATGTCGAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCGAGCAAGACAGCGAC
ATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGAGGACACTGTTGTATGGCTCAAGATCGACGAAGACAGCACGGGGGACATGCTTCCCAGCACCAGTCTCA
CTGAAGAAGGTGTTAAAAGCATCATCACCTCCCCCAACGGTCTTGTCAC