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Detailed information on CNT30117889


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697113Oryza nivaraOryza sativa44.9615.78100254forward
CNT30677041Oryza nivaraSetaria viridis31.541.9895.51178forward
CNT30524216Oryza nivaraSetaria italica59.6547.5393.18337forward
CNT30295213Oryza nivaraTriticum aestivum34.6935.5195.41196forward
CNT30439442Oryza nivaraAegilops tauschii25.4948.3293.06144forward
CNT30465769Oryza nivaraSaccharum spontaneum31.530.9694.94178forward
CNT30137065Oryza nivaraLolium perenne34.6942.8994.39196forward
CNT306938Oryza nivaraZea mays24.2517.2591.24137forward
CNT30353507Oryza nivaraEragrostis tef61.5927.2389.94348forward
CNT30365046Oryza nivaraSorghum bicolor31.518.4896.07178forward
CNT30481599Oryza nivaraChara braunii18.0522.9787.25102forward
CNT30581942Oryza nivaraEchinochloa crusgalli21.0625.5993.28119forward
CNT30498372Oryza nivaraDigitaria exilis31.8637.8995180forward

Expression of CNT30117889

Peptides detected in this lncRNA

>peptide 1 (54 aa)
ATNPNTWSFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

>peptide 2 (33 aa)
QPQIQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

>peptide 3 (32 aa)
MKNPSMENMASRPFLISFTFSSAAWSGPLMIR*

Sequence

>CNT30117889
CAGCCACAAATCCAAACACTTGGTCCTTCCTATCAGAAGATCAGAATGAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTT
AACACATTCTTCCACCCTTCTCAAACTCCTCCCTTCTTCTTCCCGGGTAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTA
CAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGAGAGGTTCTCGACGGGGCCCTCG
CCGGTGACGTAGGCCTGGATGAAGAACCCCAGCATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTCAGCAGCGCCGCCTGGTCCGGGC
CGTTGATGATCCGGTAGTACTCGGCGCCGCCGACGAGGACGACCTCGGCGGCGACGGCGACGATGAGGTTGATGGGGATGCTGTTGCCGAAGTAGTTGAG
GGTGTTGCCGTCCAGGAGGAGGGCGCCGGTCTGCATATACCATGAGTGAGTTCACTTCAGTTCAG